twitcher 0.2.2

Find template switch mutations in genomic data
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id,cluster_id,ref_ctx_region,alt_ctx_region,cluster_region,ref_cluster_offset,alt_cluster_offset,ts_1_4_region,read_id,fw_cigar,fw_cigar_ctx,fw_mi_ctx,fw_cost,fw_cost_ctx,ts_cigar,ts_cigar_ctx,ts_cost,ts_cost_ctx,ts_num,ts_1_2,ts_2_3,ts_1_4,ts_start_left_shift,ts_start_right_shift,ts_end_left_shift,ts_end_right_shift,ts_inner_alignment_cigar
6b7037a82d801803720c04a226f14f96,40,chr1:42901765-42902176,chr1:42901765-42902176,chr1:42901966-42901975,201,200,chr1:42901968-42901976,m64011_190329_072846/119931874/ccs,1D5=1X3=,81=1D119=1D5=1X3=1I172=1D28=,205T3C,5,14,"2=[TSQRR:[0,0]:[0,0]:203:6=1X1=:8]","81=1D121=[TSQRR:[0,0]:[0,0]:203:6=1X1=:8]172=1D28=",6,12,1,203,8,8,0,0,0,0,6=1X1=
b579a3c5efb6615a5167f8de1846e8ab,53,chr1:42913197-42913613,chr1:42913197-42913613,chr1:42913400-42913411,203,200,chr1:42913400-42913412,m64013_190412_043951/101319035/ccs,4D7=1X,90=5D3X42=1X18=2I9=1X9=1X24=4D7=1X38=2D162=,90TGT42T18AC9T9C31C,8,35,"[TSRRR:[0,3]:[0,0]:-64:12=:8]","90=5D3X42=1X18=2I9=1X9=1X24=[TSRRR:[0,3]:[0,0]:-64:12=:8]38=2D162=",2,29,1,-64,12,8,0,3,0,0,12=
3f0e19317a9426d1c37a576a68a0ec57,56,chr1:42913195-42913613,chr1:42913195-42913613,chr1:42913400-42913411,205,200,chr1:42913400-42913412,m64011_190326_191011/177799260/ccs,4D6=2D,61=1D29=6D1=1X43=1X18=2I9=1X9=1X24=4D6=2D38=2D162=,91T43T18AC9T9C,10,37,"[TSRRR:[0,3]:[0,0]:-64:12=:6]","61=1D29=6D1=1X43=1X18=2I9=1X9=1X24=[TSRRR:[0,3]:[0,0]:-64:12=:6]38=2D162=",2,29,1,-64,12,6,0,3,0,0,12=
244b8f29ad701be44358dcbca4f26bb6,64,chr1:42913196-42913613,chr1:42913196-42913613,chr1:42913400-42913411,204,200,chr1:42913400-42913412,m64013_190412_043951/163121371/ccs,4D6=2D,90=6D1=1X43=1X18=2I9=1X9=1X24=4D6=2D38=2D162=,91T43T18AC9T9C,10,34,"[TSRRR:[0,3]:[0,0]:-64:12=:6]","90=6D1=1X43=1X18=2I9=1X9=1X24=[TSRRR:[0,3]:[0,0]:-64:12=:6]38=2D162=",2,26,1,-64,12,6,0,3,0,0,12=
eb0d049f8f00797a84e2766eb6351ed7,66,chr1:42913196-42913613,chr1:42913196-42913613,chr1:42913400-42913411,204,200,chr1:42913400-42913412,m64013_190324_024932/22874592/ccs,4D6=2D,90=6D1=1X43=1X18=2I9=1X9=1X24=4D6=2D38=2D162=,91T43T18AC9T9C,10,34,"[TSRRR:[0,3]:[0,0]:-64:12=:6]","90=6D1=1X43=1X18=2I9=1X9=1X24=[TSRRR:[0,3]:[0,0]:-64:12=:6]38=2D162=",2,26,1,-64,12,6,0,3,0,0,12=
4e4f983a53a2a5efcbfb28518fb4147a,68,chr1:42913075-42913499,chr1:42913075-42913499,chr1:42913276-42913293,201,200,chr1:42913276-42913294,m64013_190412_043951/55705856/ccs,1D9=6D1=1X,73=1D127=1D9=6D1=1X43=1X18=2I9=1X9=1X24=4D6=2D38=2D48=,210T43T18AC9T9C,13,40,"[TSQRR:[0,0]:[0,0]:3:11=:18]","73=1D127=[TSQRR:[0,0]:[0,0]:3:11=:18]43=1X18=2I9=1X9=1X24=4D6=2D38=2D48=",2,29,1,3,11,18,0,0,0,0,11=
d92e94d60aa421e2874192e17ae7e3ab,69,chr1:42913195-42913613,chr1:42913195-42913613,chr1:42913400-42913411,205,200,chr1:42913400-42913412,m64013_190412_043951/55705856/ccs,4D6=2D,81=1D9=6D1=1X43=1X18=2I9=1X9=1X24=4D6=2D38=2D162=,91T43T18AC9T9C,10,37,"[TSRRR:[0,3]:[0,0]:-64:12=:6]","81=1D9=6D1=1X43=1X18=2I9=1X9=1X24=[TSRRR:[0,3]:[0,0]:-64:12=:6]38=2D162=",2,29,1,-64,12,6,0,3,0,0,12=
c12dd2b72c0c4e18c3b9dd6418fc98c7,72,chr1:42913196-42913613,chr1:42913196-42913613,chr1:42913400-42913411,204,200,chr1:42913400-42913412,m64011_190326_191011/78972214/ccs,4D6=2D,90=6D1=1X43=1X18=2I9=1X9=1X24=4D6=2D38=2D162=,91T43T18AC9T9C,10,34,"[TSRRR:[0,3]:[0,0]:-64:12=:6]","90=6D1=1X43=1X18=2I9=1X9=1X24=[TSRRR:[0,3]:[0,0]:-64:12=:6]38=2D162=",2,26,1,-64,12,6,0,3,0,0,12=