twitcher 0.1.8

Find template switch mutations in genomic data
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.87.0"
name = "twitcher"
version = "0.1.8"
authors = ["Jasper Krauter <jasper.krauter@helsinki.fi>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Find template switch mutations in genomic data"
documentation = "https://docs.rs/twitcher"
readme = "README.md"
keywords = [
    "htslib",
    "mutations",
    "genome",
    "bioinformatics",
]
license = "MIT"
repository = "https://version.helsinki.fi/kraujasp/twitcher"

[[bin]]
name = "twitcher"
path = "src/main.rs"

[[test]]
name = "integration_tests"
path = "tests/integration_tests.rs"

[dependencies.anyhow]
version = "1"

[dependencies.async-stream]
version = "0.3"

[dependencies.bitvec]
version = "1"

[dependencies.bstr]
version = "1"

[dependencies.bytesize]
version = "2"

[dependencies.clap]
version = "4"
features = ["derive"]

[dependencies.clap-verbosity-flag]
version = "3"
features = [
    "tracing",
    "serde",
]
default-features = false

[dependencies.compact-genome]
version = "12"

[dependencies.csv]
version = "1"

[dependencies.generic_a_star]
version = "1"
features = ["serde"]

[dependencies.indicatif]
version = "0.18"

[dependencies.itertools]
version = "0.14"

[dependencies.lib_tsalign]
version = "1"
features = ["serde"]

[dependencies.regex]
version = "1"

[dependencies.rlimit]
version = "0.11"

[dependencies.rmp-serde]
version = "1"

[dependencies.rusqlite]
version = "0.38.0"
features = ["bundled"]

[dependencies.rust-htslib]
version = "1"

[dependencies.serde]
version = "1"
features = [
    "derive",
    "rc",
]

[dependencies.sysinfo]
version = "0.36"

[dependencies.tokio]
version = "1"
features = [
    "rt-multi-thread",
    "io-util",
    "io-std",
    "time",
    "process",
    "macros",
    "fs",
]

[dependencies.tokio-stream]
version = "0.1"

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-indicatif]
version = "0.3"

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]

[dependencies.url]
version = "2"

[dev-dependencies.assert_cmd]
version = "2"

[dev-dependencies.tempfile]
version = "3"