twitcher 0.1.5

Find template switch mutations in genomic data
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[package]
name = "twitcher"
version = "0.1.5"
authors = ["Jasper Krauter <jasper.krauter@helsinki.fi>"]
edition = "2024"
rust-version = "1.87.0"
description = "Find template switch mutations in genomic data"
documentation = "https://docs.rs/twitcher"
readme = "../README.md"
repository = "https://version.helsinki.fi/kraujasp/twitcher"
license = "MIT"
keywords = ["htslib", "mutations", "genome", "bioinformatics"]

[dependencies]
anyhow = "1.0.98"
bytesize = "2.0.1"
clap = { version = "4.5.38", features = ["derive"] }
clap-verbosity-flag = { version = "3.0.3", default-features = false, features = ["tracing", "serde"] }
enum-map = "2.7.3"
generic_a_star = { version = "0.21.3", features = ["serde"] }
indicatif = "0.18.0"
lib_tsalign = { version = "0.21.3", features = ["serde"] }
rust-htslib.workspace = true
sysinfo = "0.36.1"
tracing = "0.1.41"
tracing-indicatif = "0.3.9"
tracing-subscriber = { version = "0.3.19", features = ["env-filter"] }
url = "2.5.4"
bstr = "1.12.1"
bitvec = "1.0.1"
regex = "1.12.2"
csv = "1.4.0"
serde = { version = "1.0.228", features = ["derive"] }
itertools = "0.14.0"
compact-genome = "12.5.0"
rmp-serde = "1.3.1"
rlimit = "0.11.0"
tokio = { version = "1.49.0", features = ["full"] }
tokio-stream = "0.1"
async-stream = "0.3"

[dev-dependencies]
assert_cmd = "2.0.17"
tempfile = "3.21.0"