tskit 0.1.2

rust interface to tskit
Documentation
use crate::bindings as ll_bindings;
use crate::metadata;
use crate::{tsk_flags_t, tsk_id_t, TskitError};

/// An immtable view of a node table.
///
/// These are not created directly.
/// Instead, use [`TableCollection::nodes`](crate::TableCollection::nodes)
/// to get a reference to an existing node table;
pub struct NodeTable<'a> {
    table_: &'a ll_bindings::tsk_node_table_t,
}

impl<'a> NodeTable<'a> {
    pub(crate) fn new_from_table(nodes: &'a ll_bindings::tsk_node_table_t) -> Self {
        NodeTable { table_: nodes }
    }

    /// Return the number of rows
    pub fn num_rows(&'a self) -> ll_bindings::tsk_size_t {
        self.table_.num_rows
    }

    /// Return the ``time`` value from row ``row`` of the table.
    ///
    /// # Errors
    ///
    /// Will return [``IndexError``](crate::TskitError::IndexError)
    /// if ``row`` is out of range.
    pub fn time(&'a self, row: tsk_id_t) -> Result<f64, TskitError> {
        unsafe_tsk_column_access!(row, 0, self.num_rows(), self.table_.time)
    }

    /// Return the ``flags`` value from row ``row`` of the table.
    ///
    /// # Errors
    ///
    /// Will return [``IndexError``](crate::TskitError::IndexError)
    /// if ``row`` is out of range.
    pub fn flags(&'a self, row: tsk_id_t) -> Result<tsk_flags_t, TskitError> {
        unsafe_tsk_column_access!(row, 0, self.num_rows(), self.table_.flags)
    }

    /// Return the ``population`` value from row ``row`` of the table.
    ///
    /// # Errors
    ///
    /// Will return [``IndexError``](crate::TskitError::IndexError)
    /// if ``row`` is out of range.
    pub fn population(&'a self, row: tsk_id_t) -> Result<tsk_id_t, TskitError> {
        unsafe_tsk_column_access!(row, 0, self.num_rows(), self.table_.population)
    }

    /// Return the ``population`` value from row ``row`` of the table.
    ///
    /// # Errors
    ///
    /// Will return [``IndexError``](crate::TskitError::IndexError)
    /// if ``row`` is out of range.
    pub fn deme(&'a self, row: tsk_id_t) -> Result<tsk_id_t, TskitError> {
        self.population(row)
    }

    /// Return the ``individual`` value from row ``row`` of the table.
    ///
    /// # Errors
    ///
    /// Will return [``IndexError``](crate::TskitError::IndexError)
    /// if ``row`` is out of range.
    pub fn individual(&'a self, row: tsk_id_t) -> Result<tsk_id_t, TskitError> {
        unsafe_tsk_column_access!(row, 0, self.num_rows(), self.table_.individual)
    }

    pub fn metadata<T: metadata::MetadataRoundtrip>(
        &'a self,
        row: tsk_id_t,
    ) -> Result<Option<T>, TskitError> {
        let buffer = metadata_to_vector!(T, self, row);
        decode_metadata_row!(T, buffer)
    }
}