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use std::{fs::File, io::BufWriter, path::Path};
use anyhow::Result;
use byteorder::WriteBytesExt;
use nalgebra::Vector4;
use crate::{
affine::get_affine_and_translation,
tractogram::{Point, RefTractogramItem, Tractogram, TractogramItem},
Affine, Affine4, CHeader, Header, Spacing, Translation, TrkEndianness,
};
macro_rules! write_streamline {
($writer:ident, $streamline:expr, $scalars:expr, $properties:expr) => {
if $writer.nb_scalars == 0 {
$streamline.write($writer);
} else {
$writer.writer.write_i32::<TrkEndianness>($streamline.len() as i32).unwrap();
$writer.real_n_count += 1;
let scalars = $scalars.chunks($writer.nb_scalars);
for (p, scalars) in $streamline.into_iter().zip(scalars) {
$writer.write_point(&p);
$writer.write_f32s(scalars);
}
}
$writer.write_f32s($properties);
};
($writer:ident, $streamline:expr, $nb_points:expr) => {
$writer.writer.write_i32::<TrkEndianness>($nb_points as i32).unwrap();
for p in $streamline {
$writer.write_point(&p);
}
$writer.real_n_count += 1;
};
}
pub struct Writer {
writer: BufWriter<File>,
pub affine4: Affine4,
affine: Affine,
translation: Translation,
nb_scalars: usize,
real_n_count: i32,
raw: bool,
voxel_space: bool,
}
pub trait Writable {
fn write(self, w: &mut Writer);
}
impl Writable for Tractogram {
fn write(self, w: &mut Writer) {
for item in &self {
item.write(w);
}
}
}
impl Writable for TractogramItem {
fn write(self, writer: &mut Writer) {
let (streamline, scalars, properties) = self;
write_streamline!(writer, streamline, scalars.data.as_slice(), &properties);
}
}
impl<'data> Writable for RefTractogramItem<'data> {
fn write(self, writer: &mut Writer) {
let (streamline, scalars, properties) = self;
write_streamline!(writer, streamline, scalars, properties);
}
}
impl<'data> Writable for &'data [Point] {
fn write(self, writer: &mut Writer) {
write_streamline!(writer, self, self.len());
}
}
impl Writer {
pub fn new<P: AsRef<Path>>(path: P, reference: Option<&Header>) -> Result<Writer> {
let f = File::create(path).expect("Can't create new trk file.");
let mut writer = BufWriter::new(f);
let (affine4, nb_scalars) = match reference {
Some(header) => {
header.write(&mut writer)?;
let affine4 = header
.affine4_to_rasmm
.try_inverse()
.expect("Unable to inverse 4x4 affine matrix");
(affine4, header.scalars_name.len())
}
None => {
Header::default().write(&mut writer)?;
(Affine4::identity(), 0)
}
};
let (affine, translation) = get_affine_and_translation(&affine4);
Ok(Writer {
writer,
affine4,
affine,
translation,
real_n_count: 0,
nb_scalars,
raw: false,
voxel_space: false,
})
}
pub fn from_voxel_space(mut self, spacing: Spacing) -> Self {
if self.raw {
panic!("Can't use raw + voxel space reading");
}
self.voxel_space = true;
self.affine = Affine::from_diagonal(&spacing);
self.affine4 = Affine4::from_diagonal(&Vector4::new(spacing.x, spacing.y, spacing.z, 1.0));
self.translation = Translation::zeros();
self
}
pub fn raw(mut self) -> Self {
if self.voxel_space {
panic!("Can't use voxel space + raw reading");
}
self.raw = true;
self
}
pub fn reset_affine(&mut self) {
self.affine4 = Affine4::identity();
self.affine = Affine::identity();
self.translation = Translation::zeros();
}
pub fn apply_affine(&mut self, affine: &Affine4) {
self.affine4 = self.affine4 * affine;
let (affine, translation) = get_affine_and_translation(&self.affine4);
self.affine = affine;
self.translation = translation;
}
pub fn write<T: Writable>(&mut self, data: T) {
data.write(self);
}
pub fn write_from_iter<I>(&mut self, streamline: I, len: usize)
where
I: IntoIterator<Item = Point>,
{
write_streamline!(self, streamline, len);
}
fn write_point(&mut self, p: &Point) {
let p = if self.raw { *p } else { self.affine * p + self.translation };
self.writer.write_f32::<TrkEndianness>(p.x).unwrap();
self.writer.write_f32::<TrkEndianness>(p.y).unwrap();
self.writer.write_f32::<TrkEndianness>(p.z).unwrap();
}
fn write_f32s(&mut self, data: &[f32]) {
for &d in data {
self.writer.write_f32::<TrkEndianness>(d).unwrap();
}
}
}
impl Drop for Writer {
fn drop(&mut self) {
CHeader::seek_n_count_field(&mut self.writer)
.expect("Unable to seek to 'n_count' field before closing trk file.");
self.writer
.write_i32::<TrkEndianness>(self.real_n_count)
.expect("Unable to write 'n_count' field before closing trk file.");
}
}