tribev2 0.0.4

TRIBE v2 — multimodal fMRI brain encoding model inference in Rust
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
//! Full numeric parity test: validates every output path in Rust matches Python.
//!
//! Tests:
//! 1. Forward pass output (existing — Pearson = 1.0 against Python reference)
//! 2. Per-timestep prediction unraveling matches Python layout
//! 3. Average prediction across time matches Python
//! 4. Evaluation metrics (Pearson, MSE) computed on same data match Python
//! 5. Correlation map matches Python per-vertex Pearson
//! 6. ROI summaries are consistent (sums match vertex data)
//! 7. Modality ablation produces distinct contribution maps
//!
//! Prerequisites:
//!   python3 scripts/generate_parity_refs.py
//!   python3 scripts/generate_full_parity_refs.py

use std::collections::BTreeMap;
use std::path::Path;
use tribev2::model::tribe::TribeV2;
use tribev2::tensor::Tensor;

const DATA_DIR: &str = "/Users/Shared/tribev2-rs/data";
const REFS_DIR: &str = "/Users/Shared/tribev2-rs/data/parity_refs";

fn refs_exist() -> bool {
    Path::new(&format!("{}/final_output.bin", REFS_DIR)).exists()
        && Path::new(&format!("{}/model.safetensors", DATA_DIR)).exists()
        && Path::new(&format!("{}/full_parity_stats.json", REFS_DIR)).exists()
}

fn load_ref_with_header(name: &str) -> Tensor {
    let path = format!("{}/{}", REFS_DIR, name);
    let bytes = std::fs::read(&path).unwrap_or_else(|e| panic!("failed to read {}: {}", path, e));
    let ndims = u32::from_le_bytes(bytes[0..4].try_into().unwrap()) as usize;
    let mut shape = Vec::with_capacity(ndims);
    let mut offset = 4;
    for _ in 0..ndims {
        let d = u32::from_le_bytes(bytes[offset..offset + 4].try_into().unwrap()) as usize;
        shape.push(d);
        offset += 4;
    }
    let n_floats: usize = shape.iter().product();
    let mut data = Vec::with_capacity(n_floats);
    for i in 0..n_floats {
        let start = offset + i * 4;
        let v = f32::from_le_bytes(bytes[start..start + 4].try_into().unwrap());
        data.push(v);
    }
    Tensor::from_vec(data, shape)
}

fn load_flat_f32(name: &str) -> Vec<f32> {
    let path = format!("{}/{}", REFS_DIR, name);
    let bytes = std::fs::read(&path).unwrap_or_else(|e| panic!("failed to read {}: {}", path, e));
    bytes.chunks_exact(4)
        .map(|b| f32::from_le_bytes([b[0], b[1], b[2], b[3]]))
        .collect()
}

fn load_json(name: &str) -> serde_json::Value {
    let path = format!("{}/{}", REFS_DIR, name);
    let s = std::fs::read_to_string(&path).unwrap_or_else(|e| panic!("failed to read {}: {}", path, e));
    serde_json::from_str(&s).unwrap()
}

fn pearson(x: &[f32], y: &[f32]) -> f64 {
    let n = x.len().min(y.len());
    let mx: f64 = x.iter().map(|&v| v as f64).sum::<f64>() / n as f64;
    let my: f64 = y.iter().map(|&v| v as f64).sum::<f64>() / n as f64;
    let mut cov = 0.0f64;
    let mut vx = 0.0f64;
    let mut vy = 0.0f64;
    for i in 0..n {
        let dx = x[i] as f64 - mx;
        let dy = y[i] as f64 - my;
        cov += dx * dy;
        vx += dx * dx;
        vy += dy * dy;
    }
    let denom = (vx * vy).sqrt();
    if denom < 1e-15 { 0.0 } else { cov / denom }
}

fn max_abs_diff(a: &[f32], b: &[f32]) -> f32 {
    a.iter().zip(b.iter()).map(|(&x, &y)| (x - y).abs()).fold(0.0f32, f32::max)
}

fn rmse(a: &[f32], b: &[f32]) -> f64 {
    let n = a.len().min(b.len());
    let sum: f64 = a.iter().zip(b.iter()).map(|(&x, &y)| {
        let d = x as f64 - y as f64;
        d * d
    }).sum();
    (sum / n as f64).sqrt()
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 1: Forward pass output matches Python reference
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_1_forward_pass_parity() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 1: Forward pass numeric parity ══\n");

    let model = TribeV2::from_pretrained(
        &format!("{}/config.yaml", DATA_DIR),
        &format!("{}/model.safetensors", DATA_DIR),
        Some(&format!("{}/build_args.json", DATA_DIR)),
    ).expect("failed to load model");

    let input_text = load_ref_with_header("input_text.bin");
    let input_audio = load_ref_with_header("input_audio.bin");
    let input_video = load_ref_with_header("input_video.bin");

    let mut features = BTreeMap::new();
    features.insert("text".to_string(), input_text);
    features.insert("audio".to_string(), input_audio);
    features.insert("video".to_string(), input_video);

    let rust_output = model.forward(&features, None, true);
    let ref_final = load_ref_with_header("final_output.bin");

    assert_eq!(rust_output.shape, ref_final.shape,
        "Shape mismatch: rust={:?} vs python={:?}", rust_output.shape, ref_final.shape);

    let r = pearson(&rust_output.data, &ref_final.data);
    let mad = max_abs_diff(&rust_output.data, &ref_final.data);
    let rms = rmse(&rust_output.data, &ref_final.data);

    eprintln!("  Pearson:  {:.10}", r);
    eprintln!("  Max abs:  {:.2e}", mad);
    eprintln!("  RMSE:     {:.2e}", rms);

    assert!(r > 0.999999, "Pearson {:.10} < 0.999999", r);
    assert!(mad < 1e-4, "Max abs diff {:.2e} >= 1e-4", mad);
    eprintln!("  ✅ PASS");
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 2: Per-timestep prediction layout matches Python
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_2_prediction_layout_parity() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 2: Per-timestep prediction layout ══\n");

    let model = TribeV2::from_pretrained(
        &format!("{}/config.yaml", DATA_DIR),
        &format!("{}/model.safetensors", DATA_DIR),
        Some(&format!("{}/build_args.json", DATA_DIR)),
    ).unwrap();

    let input_text = load_ref_with_header("input_text.bin");
    let input_audio = load_ref_with_header("input_audio.bin");
    let input_video = load_ref_with_header("input_video.bin");

    let mut features = BTreeMap::new();
    features.insert("text".to_string(), input_text);
    features.insert("audio".to_string(), input_audio);
    features.insert("video".to_string(), input_video);

    // Forward pass and unravel (same logic as CLI)
    let output = model.forward(&features, None, true);
    let n_out = output.shape[1];
    let n_t = output.shape[2];

    let predictions: Vec<Vec<f32>> = (0..n_t)
        .map(|ti| {
            (0..n_out).map(|di| output.data[di * n_t + ti]).collect()
        })
        .collect();

    // Load Python reference (flat [T*D])
    let ref_flat = load_flat_f32("predictions_flat.bin");
    let ref_n_t = 100;
    let ref_n_v = 20484;
    assert_eq!(ref_flat.len(), ref_n_t * ref_n_v);

    // Compare each timestep
    let mut total_err = 0.0f64;
    let mut max_err = 0.0f32;
    let mut count = 0usize;

    for ti in 0..ref_n_t.min(n_t) {
        for vi in 0..ref_n_v.min(n_out) {
            let rust_val = predictions[ti][vi];
            let py_val = ref_flat[ti * ref_n_v + vi];
            let err = (rust_val - py_val).abs();
            max_err = max_err.max(err);
            total_err += (err as f64) * (err as f64);
            count += 1;
        }
    }

    let rms = (total_err / count as f64).sqrt();
    eprintln!("  Timesteps: {}", n_t.min(ref_n_t));
    eprintln!("  Vertices: {}", n_out.min(ref_n_v));
    eprintln!("  Max abs diff: {:.2e}", max_err);
    eprintln!("  RMSE: {:.2e}", rms);

    assert!(max_err < 1e-4, "Max error {:.2e} >= 1e-4 — layout mismatch", max_err);
    eprintln!("  ✅ PASS");
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 3: Average prediction matches Python
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_3_average_prediction_parity() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 3: Average prediction parity ══\n");

    let model = TribeV2::from_pretrained(
        &format!("{}/config.yaml", DATA_DIR),
        &format!("{}/model.safetensors", DATA_DIR),
        Some(&format!("{}/build_args.json", DATA_DIR)),
    ).unwrap();

    let input_text = load_ref_with_header("input_text.bin");
    let input_audio = load_ref_with_header("input_audio.bin");
    let input_video = load_ref_with_header("input_video.bin");

    let mut features = BTreeMap::new();
    features.insert("text".to_string(), input_text);
    features.insert("audio".to_string(), input_audio);
    features.insert("video".to_string(), input_video);

    let output = model.forward(&features, None, true);
    let n_out = output.shape[1];
    let n_t = output.shape[2];

    // Average across timesteps: for each vertex, mean over T
    let mut avg_pred = vec![0.0f32; n_out];
    for di in 0..n_out {
        let base = di * n_t;
        let sum: f32 = output.data[base..base + n_t].iter().sum();
        avg_pred[di] = sum / n_t as f32;
    }

    let ref_avg = load_flat_f32("avg_prediction.bin");

    let r = pearson(&avg_pred, &ref_avg);
    let mad = max_abs_diff(&avg_pred, &ref_avg);

    eprintln!("  Pearson:  {:.10}", r);
    eprintln!("  Max abs:  {:.2e}", mad);

    // Load stats for cross-check
    let stats = load_json("full_parity_stats.json");
    let py_mean = stats["avg_prediction"]["mean"].as_f64().unwrap();
    let rust_mean: f64 = avg_pred.iter().map(|&v| v as f64).sum::<f64>() / avg_pred.len() as f64;
    eprintln!("  Python mean:  {:.8}", py_mean);
    eprintln!("  Rust mean:    {:.8}", rust_mean);
    eprintln!("  Mean diff:    {:.2e}", (py_mean - rust_mean).abs());

    assert!(r > 0.999999, "Pearson {:.10} < 0.999999", r);
    assert!(mad < 1e-4, "Max abs diff {:.2e} >= 1e-4", mad);
    assert!((py_mean - rust_mean).abs() < 1e-5,
        "Mean prediction diff {:.2e} >= 1e-5", (py_mean - rust_mean).abs());
    eprintln!("  ✅ PASS");
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 4: Evaluation metrics match Python
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_4_metrics_parity() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 4: Evaluation metrics parity ══\n");

    // Load predictions and ground truth
    let pred_flat = load_flat_f32("predictions_flat.bin");
    let gt_flat = load_flat_f32("ground_truth.bin");
    let py_metrics = load_json("metrics.json");

    let n_t = py_metrics["n_timesteps"].as_u64().unwrap() as usize;
    let n_v = py_metrics["n_vertices"].as_u64().unwrap() as usize;

    // Reshape to Vec<Vec<f32>>
    let predictions: Vec<Vec<f32>> = (0..n_t)
        .map(|ti| pred_flat[ti * n_v..(ti + 1) * n_v].to_vec())
        .collect();
    let truth: Vec<Vec<f32>> = (0..n_t)
        .map(|ti| gt_flat[ti * n_v..(ti + 1) * n_v].to_vec())
        .collect();

    // Rust metrics
    let rust_mean_r = tribev2::metrics::mean_pearson(&predictions, &truth);
    let rust_median_r = tribev2::metrics::median_pearson(&predictions, &truth);
    let rust_mse = tribev2::metrics::mse(&predictions, &truth);

    let py_mean_r = py_metrics["mean_pearson"].as_f64().unwrap() as f32;
    let py_median_r = py_metrics["median_pearson"].as_f64().unwrap() as f32;
    let py_mse = py_metrics["mse"].as_f64().unwrap() as f32;

    eprintln!("  Mean Pearson r:   Rust={:.8} Python={:.8} diff={:.2e}",
        rust_mean_r, py_mean_r, (rust_mean_r - py_mean_r).abs());
    eprintln!("  Median Pearson r: Rust={:.8} Python={:.8} diff={:.2e}",
        rust_median_r, py_median_r, (rust_median_r - py_median_r).abs());
    eprintln!("  MSE:              Rust={:.8} Python={:.8} diff={:.2e}",
        rust_mse, py_mse, (rust_mse - py_mse).abs());

    assert!((rust_mean_r - py_mean_r).abs() < 1e-4,
        "Mean Pearson diff {:.2e}", (rust_mean_r - py_mean_r).abs());
    assert!((rust_median_r - py_median_r).abs() < 1e-4,
        "Median Pearson diff {:.2e}", (rust_median_r - py_median_r).abs());
    assert!((rust_mse - py_mse).abs() < 1e-6,
        "MSE diff {:.2e}", (rust_mse - py_mse).abs());
    eprintln!("  ✅ PASS");
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 5: Correlation map matches Python
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_5_correlation_map_parity() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 5: Per-vertex correlation map parity ══\n");

    let pred_flat = load_flat_f32("predictions_flat.bin");
    let gt_flat = load_flat_f32("ground_truth.bin");
    let ref_corr = load_flat_f32("correlation_map.bin");
    let py_metrics = load_json("metrics.json");

    let n_t = py_metrics["n_timesteps"].as_u64().unwrap() as usize;
    let n_v = py_metrics["n_vertices"].as_u64().unwrap() as usize;

    let predictions: Vec<Vec<f32>> = (0..n_t)
        .map(|ti| pred_flat[ti * n_v..(ti + 1) * n_v].to_vec())
        .collect();
    let truth: Vec<Vec<f32>> = (0..n_t)
        .map(|ti| gt_flat[ti * n_v..(ti + 1) * n_v].to_vec())
        .collect();

    let rust_corr = tribev2::metrics::pearson_per_vertex(&predictions, &truth);

    assert_eq!(rust_corr.len(), ref_corr.len(),
        "Length mismatch: rust={} python={}", rust_corr.len(), ref_corr.len());

    let r = pearson(&rust_corr, &ref_corr);
    let mad = max_abs_diff(&rust_corr, &ref_corr);
    let rms = rmse(&rust_corr, &ref_corr);

    eprintln!("  Correlation map Pearson:  {:.10}", r);
    eprintln!("  Max abs diff:            {:.2e}", mad);
    eprintln!("  RMSE:                    {:.2e}", rms);

    assert!(r > 0.9999, "Correlation map Pearson {:.10} < 0.9999", r);
    assert!(mad < 1e-3, "Max abs diff {:.2e} >= 1e-3", mad);
    eprintln!("  ✅ PASS");
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 6: ROI summaries are consistent with vertex data
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_6_roi_consistency() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 6: ROI summary consistency ══\n");

    let ref_avg = load_flat_f32("avg_prediction.bin");

    // Compute ROI summary using our module
    let roi_summary = tribev2::roi::summarize_by_roi(&ref_avg, None);

    eprintln!("  Number of ROIs: {}", roi_summary.len());

    // Verify: for each ROI, the mean matches manual computation from vertices
    let labels = tribev2::roi::get_hcp_labels(None);
    let mut max_roi_diff = 0.0f32;

    for (name, vertices) in &labels {
        if vertices.is_empty() { continue; }
        let manual_mean: f32 = vertices.iter()
            .filter_map(|&vi| ref_avg.get(vi))
            .sum::<f32>() / vertices.iter().filter(|&&vi| vi < ref_avg.len()).count() as f32;

        if let Some(&roi_mean) = roi_summary.get(name) {
            let diff = (manual_mean - roi_mean).abs();
            max_roi_diff = max_roi_diff.max(diff);
            if diff > 1e-6 {
                eprintln!("  WARNING: ROI {} manual={:.8} roi={:.8} diff={:.2e}",
                    name, manual_mean, roi_mean, diff);
            }
        }
    }

    eprintln!("  Max ROI mean diff: {:.2e}", max_roi_diff);
    assert!(max_roi_diff < 1e-6, "ROI mean computation has errors");

    // Top-k should be sorted
    let topk = tribev2::roi::get_topk_rois(&ref_avg, 10, None);
    eprintln!("  Top-10 ROIs:");
    for (i, (name, val)) in topk.iter().enumerate() {
        eprintln!("    {}: {} = {:.6}", i + 1, name, val);
    }

    // Verify descending order
    for w in topk.windows(2) {
        assert!(w[0].1 >= w[1].1, "Top-k not sorted: {} ({}) < {} ({})",
            w[0].0, w[0].1, w[1].0, w[1].1);
    }

    eprintln!("  ✅ PASS");
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 7: Modality ablation produces distinct maps
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_7_modality_ablation() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 7: Modality ablation ══\n");

    let model = TribeV2::from_pretrained(
        &format!("{}/config.yaml", DATA_DIR),
        &format!("{}/model.safetensors", DATA_DIR),
        Some(&format!("{}/build_args.json", DATA_DIR)),
    ).unwrap();

    let input_text = load_ref_with_header("input_text.bin");
    let input_audio = load_ref_with_header("input_audio.bin");
    let input_video = load_ref_with_header("input_video.bin");

    let mut features = BTreeMap::new();
    features.insert("text".to_string(), input_text);
    features.insert("audio".to_string(), input_audio);
    features.insert("video".to_string(), input_video);

    let contributions = model.modality_ablation(&features, None);

    eprintln!("  Modality contributions:");
    let mut all_norms = Vec::new();
    for (name, contrib) in &contributions {
        let mean: f32 = contrib.iter().sum::<f32>() / contrib.len() as f32;
        let max: f32 = contrib.iter().cloned().fold(f32::NEG_INFINITY, f32::max);
        let norm: f32 = contrib.iter().map(|v| v * v).sum::<f32>().sqrt();
        eprintln!("    {}: mean={:.6}, max={:.6}, norm={:.4}", name, mean, max, norm);
        all_norms.push((name.clone(), norm));
    }

    // Verify: each modality should have nonzero contribution
    for (name, norm) in &all_norms {
        assert!(*norm > 0.0, "Modality {} has zero contribution", name);
    }

    // Verify: contributions should differ between modalities
    if all_norms.len() >= 2 {
        let r = pearson(
            &contributions[&all_norms[0].0],
            &contributions[&all_norms[1].0],
        );
        eprintln!("  Correlation between {} and {}: {:.6}",
            all_norms[0].0, all_norms[1].0, r);
        // They shouldn't be identical (r < 1.0)
        assert!(r < 0.999, "Modality contributions are too similar (r={:.6})", r);
    }

    eprintln!("  ✅ PASS");
}

// ═══════════════════════════════════════════════════════════════════════════
// TEST 8: Intermediate stage parity (projectors + concatenation)
// ═══════════════════════════════════════════════════════════════════════════

#[test]
fn test_8_intermediate_stages() {
    if !refs_exist() {
        eprintln!("SKIP: reference files not found");
        return;
    }
    eprintln!("\n══ TEST 8: Intermediate stage parity ══\n");

    let model = TribeV2::from_pretrained(
        &format!("{}/config.yaml", DATA_DIR),
        &format!("{}/model.safetensors", DATA_DIR),
        Some(&format!("{}/build_args.json", DATA_DIR)),
    ).unwrap();

    let input_text = load_ref_with_header("input_text.bin");
    let input_audio = load_ref_with_header("input_audio.bin");
    let input_video = load_ref_with_header("input_video.bin");

    let mut features = BTreeMap::new();
    features.insert("text".to_string(), input_text);
    features.insert("audio".to_string(), input_audio);
    features.insert("video".to_string(), input_video);

    // Test aggregate_features (after projectors + concat)
    let agg = model.aggregate_features(&features);
    let ref_cat = load_ref_with_header("after_cat.bin");

    let r = pearson(&agg.data, &ref_cat.data);
    let mad = max_abs_diff(&agg.data, &ref_cat.data);

    eprintln!("  after_cat shape: rust={:?} python={:?}", agg.shape, ref_cat.shape);
    eprintln!("  Pearson:  {:.10}", r);
    eprintln!("  Max abs:  {:.2e}", mad);

    assert_eq!(agg.shape, ref_cat.shape);
    assert!(r > 0.999999, "after_cat Pearson {:.10} < 0.999999", r);
    assert!(mad < 1e-4, "after_cat max abs diff {:.2e} >= 1e-4", mad);
    eprintln!("  ✅ PASS");
}