transcriptomic-rs 0.1.0

Expression matrix assembly and normalization → Arrow RecordBatches
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.85.0"
name = "transcriptomic-rs"
version = "0.1.0"
authors = ["Kresna Sucandra"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Expression matrix assembly and normalization → Arrow RecordBatches"
readme = "README.md"
keywords = [
    "genomics",
    "transcriptomics",
    "arrow",
    "bioinformatics",
    "omics",
]
categories = [
    "science",
    "parser-implementations",
]
license = "MIT OR Apache-2.0"
repository = "https://github.com/SHA888/multiomics-rs"
resolver = "2"

[lib]
name = "transcriptomic_rs"
path = "src/lib.rs"

[[test]]
name = "matrix_assembly"
path = "tests/matrix_assembly.rs"

[[test]]
name = "missing_values"
path = "tests/missing_values.rs"

[[test]]
name = "normalization"
path = "tests/normalization.rs"

[[bench]]
name = "normalization"
path = "benches/normalization.rs"
harness = false

[dependencies.anyhow]
version = "1"

[dependencies.arrow]
version = "58"

[dependencies.geo-soft-rs]
version = "0.1.1"

[dependencies.rayon]
version = "1.11"

[dependencies.thiserror]
version = "2"

[dev-dependencies.criterion]
version = "0.8"
features = ["html_reports"]

[dev-dependencies.insta]
version = "1"

[dev-dependencies.tempfile]
version = "3"