tinyjuice 0.2.1

Pluggable token compression for OpenHuman.
Documentation
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diff --git a/src/openhuman/memory_store/chunks/store.rs b/src/openhuman/memory_store/chunks/store.rs
index 61b4d12fb..7237cd6e9 100644
--- a/src/openhuman/memory_store/chunks/store.rs
+++ b/src/openhuman/memory_store/chunks/store.rs
@@ -1,122 +1,120 @@
 //! SQLite-backed persistence for ingested chunks (Phase 1 / issue #707).
 //!
 //! The store lives at `<workspace>/memory_tree/chunks.db`. Schema is applied
 //! lazily on first access via `with_connection`, so the DB is created on
 //! demand without an explicit migration step.
 //!
 //! Upsert semantics: writes are idempotent on `chunk.id` so re-ingesting the
 //! same raw source yields no duplicates.
 //!
 //! ## Connection cache (#2206)
 //!
 //! `with_connection()` previously opened a new SQLite connection and re-ran
 //! the full schema init (8 tables, 15+ indexes, 8+ migrations) on **every**
 //! call. With 4 workers polling every 5 s this amounted to ~69K connection
 //! opens/day, and a family of WAL/SHM cold-start I/O codes (1546
 //! IOERR_TRUNCATE, 4618 IOERR_SHMOPEN, 4874 IOERR_SHMSIZE, 14 CANTOPEN)
 //! flooded Sentry with ~19K events in 4 days.
 //!
 //! Fix: a process-level `ConnectionCache` keyed by DB path. Each entry holds
 //! one `parking_lot::Mutex<Connection>` that is initialised once (schema +
 //! migrations + legacy-embedding migration) and then reused for all subsequent
 //! calls. A per-entry `CircuitBreaker` stops retrying after 3 consecutive
 //! init failures for 30 s so a broken install does not busy-loop.
 
 use anyhow::{Context, Result};
-use chrono::{DateTime, TimeZone, Utc};
+use chrono::Utc;
 use rusqlite::{params, Connection, OptionalExtension, Transaction};
 use std::collections::{HashMap, HashSet};
 #[cfg(test)]
 use std::sync::Arc;
 use std::time::Duration;
 
 use crate::openhuman::config::Config;
 use crate::openhuman::memory::util::redact::{self, redact as redact_value};
-use crate::openhuman::memory_store::chunks::types::{Chunk, Metadata, SourceKind, SourceRef};
+use crate::openhuman::memory_store::chunks::types::{Chunk, SourceKind};
 use crate::openhuman::memory_store::content::StagedChunk;
 use crate::openhuman::tinycortex::memory_config_from;
 
 const DB_DIR: &str = "memory_tree";
 const DB_FILE: &str = "chunks.db";
-const DEFAULT_LIST_LIMIT: usize = 100;
-const MAX_LIST_LIMIT: usize = 10_000;
 // 15s gives the busy-handler enough headroom that transient write-lock
 // contention (4 job workers + scheduler + ingest producers all writing the
 // same `memory_tree/chunks.db`) is absorbed inside rusqlite instead of
 // surfacing as `SQLITE_BUSY` to callers. Workers still treat busy as a
 // soft signal (see `memory_tree::jobs::worker`) so even if this is
 // exceeded, the only effect is a one-poll backoff — but 15s is
 // comfortably above realistic peer-write durations and shrinks the rate
 // at which we have to fall back to that path. The previous 5s was tight
 // enough on contended Windows hosts that we were observing avoidable
 // busy returns (see OPENHUMAN-TAURI-BP).
 const SQLITE_BUSY_TIMEOUT: Duration = Duration::from_secs(15);
 
 /// Chunk lifecycle: freshly persisted, awaiting the async extract job.
 pub const CHUNK_STATUS_PENDING_EXTRACTION: &str = "pending_extraction";
 /// Chunk lifecycle: extract ran and the chunk passed admission.
 pub const CHUNK_STATUS_ADMITTED: &str = "admitted";
 /// Chunk lifecycle: appended to the L0 buffer of its source tree.
 pub const CHUNK_STATUS_BUFFERED: &str = "buffered";
 /// Chunk lifecycle: rolled into a sealed L1 summary.
 pub const CHUNK_STATUS_SEALED: &str = "sealed";
 /// Chunk lifecycle: rejected by the admission gate (too low signal).
 pub const CHUNK_STATUS_DROPPED: &str = "dropped";
 
 // `PRAGMA foreign_keys = ON` is intentionally NOT in SCHEMA — it is
 // a connection-local pragma that resets to off on every new
 // `Connection::open`. SCHEMA only runs once per DB path (first-init);
 // applying foreign_keys here would leak FK-off into every later
 // `with_connection()` call that hits the fast path. The pragma is
 // set per-connection in `open_connection()` instead.
 
 /// `PRAGMA user_version` value once the one-shot legacy→sidecar embedding
 /// migration (#1574 §7) has run. `0` (fresh/legacy DB) triggers the copy on
 /// next open; `>= 1` skips it. Bump only for a new one-shot data migration.
 const TREE_EMBEDDING_MIGRATION_VERSION: i64 = 1;
 
 /// `PRAGMA user_version` value once the global/topic-tree purge has run.
 /// The global (time-axis) and topic (subject-axis) trees were removed; this
 /// one-shot migration deletes their rows + on-disk summary folders. `< 2`
 /// triggers the purge on next open; `>= 2` skips it.
 const GLOBAL_TOPIC_PURGE_MIGRATION_VERSION: i64 = 2;
 
 const SCHEMA: &str = "
 CREATE TABLE IF NOT EXISTS mem_tree_chunks (
     id                     TEXT PRIMARY KEY,
     source_kind            TEXT NOT NULL,
     source_id              TEXT NOT NULL,
     path_scope             TEXT,
     source_ref             TEXT,
     owner                  TEXT NOT NULL,
     timestamp_ms           INTEGER NOT NULL,
     time_range_start_ms    INTEGER NOT NULL,
     time_range_end_ms      INTEGER NOT NULL,
     tags_json              TEXT NOT NULL DEFAULT '[]',
     content                TEXT NOT NULL,
     token_count            INTEGER NOT NULL,
     seq_in_source          INTEGER NOT NULL,
     created_at_ms          INTEGER NOT NULL
 );
 
 CREATE INDEX IF NOT EXISTS idx_mem_tree_chunks_source
     ON mem_tree_chunks(source_kind, source_id);
 CREATE INDEX IF NOT EXISTS idx_mem_tree_chunks_timestamp
     ON mem_tree_chunks(timestamp_ms);
 CREATE INDEX IF NOT EXISTS idx_mem_tree_chunks_owner
     ON mem_tree_chunks(owner);
 CREATE INDEX IF NOT EXISTS idx_mem_tree_chunks_source_seq
     ON mem_tree_chunks(source_kind, source_id, seq_in_source);
 
 -- Per-(chunk, embedding model) vectors (#1574). The legacy
 -- mem_tree_chunks.embedding column remains in place during the dual-write
 -- migration; this table lets multiple vector spaces coexist safely.
 CREATE TABLE IF NOT EXISTS mem_tree_chunk_embeddings (
     chunk_id               TEXT NOT NULL REFERENCES mem_tree_chunks(id) ON DELETE CASCADE,
     model_signature        TEXT NOT NULL,
     vector                 BLOB NOT NULL,
     dim                    INTEGER NOT NULL,
     created_at             REAL NOT NULL,
     PRIMARY KEY (chunk_id, model_signature)
 );
 
@@ -492,334 +490,177 @@ pub(crate) fn upsert_staged_chunks_tx(
             path_scope = excluded.path_scope,
             source_ref = excluded.source_ref,
             owner = excluded.owner,
             timestamp_ms = excluded.timestamp_ms,
             time_range_start_ms = excluded.time_range_start_ms,
             time_range_end_ms = excluded.time_range_end_ms,
             tags_json = excluded.tags_json,
             content = excluded.content,
             token_count = excluded.token_count,
             seq_in_source = excluded.seq_in_source,
             created_at_ms = excluded.created_at_ms,
             content_path = excluded.content_path,
             content_sha256 = excluded.content_sha256",
     )?;
     for s in staged {
         let chunk = &s.chunk;
         // SQL `content` column always carries a ≤500-char preview now
         // — the full body either lives at `content_path` (chat /
         // document) or is reconstructed from `raw_refs_json` byte
         // ranges in the raw archive (email). See `read_chunk_body`.
         let preview: String = chunk.content.chars().take(500).collect();
         stmt.execute(params![
             chunk.id,
             chunk.metadata.source_kind.as_str(),
             chunk.metadata.source_id,
             chunk.metadata.path_scope,
             chunk.metadata.source_ref.as_ref().map(|r| r.value.as_str()),
             chunk.metadata.owner,
             chunk.metadata.timestamp.timestamp_millis(),
             chunk.metadata.time_range.0.timestamp_millis(),
             chunk.metadata.time_range.1.timestamp_millis(),
             serde_json::to_string(&chunk.metadata.tags)?,
             preview,
             chunk.token_count,
             chunk.seq_in_source,
             chunk.created_at.timestamp_millis(),
             s.content_path,
             s.content_sha256,
         ])?;
     }
     Ok(staged.len())
 }
 
 fn upsert_chunks_with_statement(
     stmt: &mut rusqlite::Statement<'_>,
     chunks: &[Chunk],
 ) -> Result<()> {
     for chunk in chunks {
         stmt.execute(params![
             chunk.id,
             chunk.metadata.source_kind.as_str(),
             chunk.metadata.source_id,
             chunk.metadata.path_scope,
             chunk.metadata.source_ref.as_ref().map(|r| r.value.as_str()),
             chunk.metadata.owner,
             chunk.metadata.timestamp.timestamp_millis(),
             chunk.metadata.time_range.0.timestamp_millis(),
             chunk.metadata.time_range.1.timestamp_millis(),
             serde_json::to_string(&chunk.metadata.tags)?,
             chunk.content,
             chunk.token_count,
             chunk.seq_in_source,
             chunk.created_at.timestamp_millis(),
         ])?;
     }
     Ok(())
 }
 
 /// Fetch one chunk by its id.
 /// Map the host `Config` to the engine `MemoryConfig` addressing the same
 /// `<workspace_dir>/memory_tree/chunks.db` (only `workspace` is load-bearing for
 /// these delegating DB reads). W3 store-op flip.
 fn engine_config(config: &Config) -> tinycortex::memory::MemoryConfig {
     memory_config_from(config, config.workspace_dir.clone())
 }
 
 pub fn get_chunk(config: &Config, id: &str) -> Result<Option<Chunk>> {
     tinycortex::memory::chunks::get_chunk(&engine_config(config), id)
 }
 
-/// Defensive cap for batched `IN (?,?,…)` reads.
-///
-/// SQLite's compile-time limit on bound parameters in a single statement
-/// (`SQLITE_MAX_VARIABLE_NUMBER`) has been **32 766** since 3.32 (2020),
-/// so 500 leaves a ~65× safety margin. The current call-site
-/// (`memory_tree::retrieval::fetch::fetch_leaves`) is capped at 20 ids,
-/// so the chunked loop runs exactly once today. The window exists so
-/// future call-sites passing larger id lists do not blow up against a
-/// host with a lower compile-time SQLite cap (older builds, custom
-/// embeddings, etc.).
-///
-/// Volume is **not** reduced: all input ids in → all matching rows out.
-/// The loop only splits the SQL; the merged `HashMap` is byte-identical
-/// to what one giant query would return.
-const MAX_FETCH_BATCH: usize = 500;
-
-/// Batched read of full chunk rows by id.
-///
-/// Contract mirror of looping [`get_chunk`] per id, but in
-/// `O(ceil(n / MAX_FETCH_BATCH))` SQLite round-trips instead of `O(n)`.
-/// The returned map contains only ids that exist in `mem_tree_chunks`;
-/// missing ids are silently absent (same as `get_chunk` returning
-/// `Ok(None)`). Callers that depend on input order must iterate their
-/// own id slice and look each id up in the map.
-///
-/// Reuses [`row_to_chunk`] so decoding stays bit-identical to the
-/// per-row helper — no risk of decoder drift.
+/// Batched read of full chunk rows by id — delegates to the crate.
 pub fn get_chunks_batch(config: &Config, chunk_ids: &[String]) -> Result<HashMap<String, Chunk>> {
-    if chunk_ids.is_empty() {
-        return Ok(HashMap::new());
-    }
-    log::debug!(
-        "[memory::chunk_store] get_chunks_batch: n={} windows={}",
-        chunk_ids.len(),
-        chunk_ids.len().div_ceil(MAX_FETCH_BATCH)
-    );
-    with_connection(config, |conn| {
-        let mut out: HashMap<String, Chunk> = HashMap::with_capacity(chunk_ids.len());
-        for window in chunk_ids.chunks(MAX_FETCH_BATCH) {
-            // Build the placeholder list `?1, ?2, …, ?n` matching the
-            // window length; rusqlite assigns positional binds 1..n in
-            // the order the values are passed.
-            let placeholders = (1..=window.len())
-                .map(|i| format!("?{i}"))
-                .collect::<Vec<_>>()
-                .join(",");
-            let sql = format!(
-                "SELECT id, source_kind, source_id, path_scope, source_ref, owner,
-                        timestamp_ms, time_range_start_ms, time_range_end_ms,
-                        tags_json, content, token_count, seq_in_source, created_at_ms
-                   FROM mem_tree_chunks WHERE id IN ({placeholders})"
-            );
-            let mut stmt = conn.prepare(&sql).context("prepare get_chunks_batch")?;
-            let params: Vec<&dyn rusqlite::ToSql> =
-                window.iter().map(|id| id as &dyn rusqlite::ToSql).collect();
-            let rows = stmt
-                .query_map(params.as_slice(), row_to_chunk)
-                .context("query get_chunks_batch")?;
-            for row in rows {
-                let chunk = row.context("decode get_chunks_batch row")?;
-                out.insert(chunk.id.clone(), chunk);
-            }
-        }
-        log::debug!(
-            "[memory::chunk_store] get_chunks_batch: matched {}/{} ids",
-            out.len(),
-            chunk_ids.len()
-        );
-        Ok(out)
-    })
+    tinycortex::memory::chunks::get_chunks_batch(&engine_config(config), chunk_ids)
 }
 
-/// Query parameters for [`list_chunks`]. All fields are optional filters —
-/// callers pass `ListChunksQuery::default()` to get recent-across-everything.
-#[derive(Debug, Default, Clone)]
-pub struct ListChunksQuery {
-    pub source_kind: Option<SourceKind>,
-    pub source_id: Option<String>,
-    pub owner: Option<String>,
-    /// Inclusive lower bound on `timestamp` (milliseconds since epoch).
-    pub since_ms: Option<i64>,
-    /// Inclusive upper bound on `timestamp` (milliseconds since epoch).
-    pub until_ms: Option<i64>,
-    /// Max rows to return (default 100 when `None`).
-    pub limit: Option<usize>,
-    /// Per-profile memory-source allowlist. When `Some`, memory-source chunks
-    /// (those tagged `memory_sources`) whose source identifier is not in the set
-    /// are dropped *before* the row limit is applied, so a disallowed-source
-    /// prefix can't starve permitted rows. Non-source chunks always pass. `None`
-    /// = unrestricted (the default for every non-agent caller).
-    pub source_scope: Option<std::collections::HashSet<String>>,
-    /// When `true`, rows the admission gate rejected (`lifecycle_status =
-    /// 'dropped'`) are excluded. Default `false` preserves the all-rows
-    /// behaviour every existing caller relies on; retrieval paths that must not
-    /// surface filtered-out junk (e.g. `cover_window`) opt in.
-    pub exclude_dropped: bool,
-}
+/// Query parameters for [`list_chunks`], re-exported from the crate (identical
+/// fields incl. the `source_scope` allowlist + `exclude_dropped`).
+pub use tinycortex::memory::chunks::ListChunksQuery;
 
 /// List chunks matching the provided filters, ordered by `timestamp` DESC.
+///
+/// Delegates to the crate, which preserves the `source_scope` allowlist gate
+/// (byte-identical `chunk_source_allowed_in` + `extract_mem_src_id`) — the
+/// security-critical per-profile enforcement, pinned by
+/// `store_tests::list_chunks_source_scope_filters_before_limit`.
 pub fn list_chunks(config: &Config, query: &ListChunksQuery) -> Result<Vec<Chunk>> {
-    with_connection(config, |conn| {
-        let mut sql = String::from(
-            "SELECT id, source_kind, source_id, path_scope, source_ref, owner,
-                    timestamp_ms, time_range_start_ms, time_range_end_ms,
-                    tags_json, content, token_count, seq_in_source, created_at_ms
-               FROM mem_tree_chunks WHERE 1=1",
-        );
-        let mut bound: Vec<Box<dyn rusqlite::ToSql>> = Vec::new();
-
-        if let Some(kind) = query.source_kind {
-            sql.push_str(" AND source_kind = ?");
-            bound.push(Box::new(kind.as_str().to_string()));
-        }
-        if let Some(ref source_id) = query.source_id {
-            sql.push_str(" AND source_id = ?");
-            bound.push(Box::new(source_id.clone()));
-        }
-        if let Some(ref owner) = query.owner {
-            sql.push_str(" AND owner = ?");
-            bound.push(Box::new(owner.clone()));
-        }
-        if let Some(since_ms) = query.since_ms {
-            sql.push_str(" AND timestamp_ms >= ?");
-            bound.push(Box::new(since_ms));
-        }
-        if let Some(until_ms) = query.until_ms {
-            sql.push_str(" AND timestamp_ms <= ?");
-            bound.push(Box::new(until_ms));
-        }
-        if query.exclude_dropped {
-            sql.push_str(" AND lifecycle_status != ?");
-            bound.push(Box::new(CHUNK_STATUS_DROPPED.to_string()));
-        }
-        let requested_limit = normalized_limit(query.limit);
-        // When a profile source-scope is active, fetch a wider candidate set and
-        // apply the gate in Rust *before* truncating, so a disallowed-source
-        // prefix can't push permitted rows past the requested limit. Otherwise
-        // the SQL LIMIT alone is correct and cheap.
-        let sql_limit = if query.source_scope.is_some() {
-            MAX_LIST_LIMIT as i64
-        } else {
-            requested_limit
-        };
-        sql.push_str(" ORDER BY timestamp_ms DESC, seq_in_source ASC LIMIT ?");
-        bound.push(Box::new(sql_limit));
-
-        let mut stmt = conn.prepare(&sql)?;
-        let param_refs: Vec<&dyn rusqlite::ToSql> = bound
-            .iter()
-            .map(|b| b.as_ref() as &dyn rusqlite::ToSql)
-            .collect();
-        let mut rows = stmt
-            .query_map(param_refs.as_slice(), row_to_chunk)?
-            .collect::<rusqlite::Result<Vec<_>>>()
-            .context("Failed to collect chunks")?;
-        if let Some(ref allowed) = query.source_scope {
-            let before = rows.len();
-            rows.retain(|c| {
-                crate::openhuman::memory::source_scope::chunk_source_allowed_in(
-                    allowed,
-                    &c.metadata.tags,
-                    &c.metadata.source_id,
-                )
-            });
-            if rows.len() != before {
-                log::debug!(
-                    "[profiles] list_chunks source-scope filter: {before} -> {} row(s)",
-                    rows.len()
-                );
-            }
-            rows.truncate(requested_limit as usize);
-        }
-        Ok(rows)
-    })
+    tinycortex::memory::chunks::list_chunks(&engine_config(config), query)
 }
 
 /// Count total chunks in the store (useful for tests / diagnostics).
 pub fn count_chunks(config: &Config) -> Result<u64> {
     tinycortex::memory::chunks::count_chunks(&engine_config(config))
 }
 
 /// #002 (FR-010 / US5): extraction coverage — the fraction of chunks that have
 /// at least one indexed entity in `mem_tree_entity_index`, in `[0.0, 1.0]`.
 ///
 /// Turns "wiki built / not built" into a quality signal: a value near 0 with a
 /// non-zero chunk count means extraction is producing nothing (the model is
 /// timing out / failing), even though chunks exist — the "empty-but-built
 /// wiki" symptom. Joins the entity index against `mem_tree_chunks.id` so the
 /// numerator is node-kind-agnostic (we only count entity rows whose `node_id`
 /// is an actual chunk). Returns `0.0` when there are no chunks.
 pub fn extraction_coverage(config: &Config) -> Result<f32> {
     tinycortex::memory::chunks::extraction_coverage(&engine_config(config))
 }
 
 /// Set the lifecycle status column for `chunk_id`. See `CHUNK_STATUS_*`.
 pub fn set_chunk_lifecycle_status(config: &Config, chunk_id: &str, status: &str) -> Result<()> {
     with_connection(config, |conn| {
         set_chunk_lifecycle_status_conn(conn, chunk_id, status)
     })
 }
 
 pub(crate) fn set_chunk_lifecycle_status_tx(
     tx: &Transaction<'_>,
     chunk_id: &str,
     status: &str,
 ) -> Result<()> {
     set_chunk_lifecycle_status_conn(tx, chunk_id, status)
 }
 
 /// Read the lifecycle status column for `chunk_id`, or `None` if the row is absent.
 pub fn get_chunk_lifecycle_status(config: &Config, chunk_id: &str) -> Result<Option<String>> {
     with_connection(config, |conn| {
         get_chunk_lifecycle_status_conn(conn, chunk_id)
     })
 }
 
 pub(crate) fn get_chunk_lifecycle_status_tx(
     tx: &Transaction<'_>,
     chunk_id: &str,
 ) -> Result<Option<String>> {
     get_chunk_lifecycle_status_conn(tx, chunk_id)
 }
 
 fn get_chunk_lifecycle_status_conn(conn: &Connection, chunk_id: &str) -> Result<Option<String>> {
     let row = conn
         .query_row(
             "SELECT lifecycle_status FROM mem_tree_chunks WHERE id = ?1",
             params![chunk_id],
             |r| r.get::<_, String>(0),
         )
         .optional()?;
     Ok(row)
 }
 
 /// Count chunks currently sitting at a given lifecycle status (test/diagnostic helper).
 pub fn count_chunks_by_lifecycle_status(config: &Config, status: &str) -> Result<u64> {
     with_connection(config, |conn| {
         let n: i64 = conn.query_row(
             "SELECT COUNT(*) FROM mem_tree_chunks WHERE lifecycle_status = ?1",
             params![status],
             |r| r.get(0),
         )?;
         Ok(n.max(0) as u64)
     })
 }
 
 fn set_chunk_lifecycle_status_conn(conn: &Connection, chunk_id: &str, status: &str) -> Result<()> {
     let changed = conn.execute(
         "UPDATE mem_tree_chunks SET lifecycle_status = ?1 WHERE id = ?2",
         params![status, chunk_id],
     )?;
     if changed == 0 {
         log::warn!(
             "[memory::chunk_store] lifecycle update affected 0 rows chunk_id={} status={}",
@@ -1246,207 +1087,141 @@ pub fn delete_orphaned_source_tree(
                     "[memory::chunk_store] delete_orphaned_source_tree: source_id_hash={} has no source-scoped tree (gates_cleared={}); shared/collection trees left intact",
                     redact_value(source_id),
                     gate_ids.len(),
                 );
             false
         };
         tx.commit()?;
         Ok(cascaded)
     })?;
     if tree_cascaded {
         remove_chunk_content_files(config, &content_paths);
     }
     Ok(tree_cascaded)
 }
 
 fn remove_chunk_content_files(config: &Config, content_paths: &[String]) {
     use std::path::{Component, Path};
 
     let root = config.memory_tree_content_root();
     let canonical_root = match std::fs::canonicalize(&root) {
         Ok(path) => path,
         Err(error) => {
             if error.kind() != std::io::ErrorKind::NotFound {
                 log::warn!(
                     "[memory_tree::store] failed to resolve content root {}: {error}",
                     root.display(),
                 );
             }
             return;
         }
     };
 
     for rel in content_paths {
         let rel_path = Path::new(rel);
         let has_escape_component = rel_path.components().any(|component| {
             matches!(
                 component,
                 Component::ParentDir | Component::RootDir | Component::Prefix(_)
             )
         });
         if has_escape_component {
             log::warn!(
                 "[memory_tree::store] refusing to remove chunk file with unsafe content_path path_hash={}",
                 redact::redact(rel),
             );
             continue;
         }
 
         let path = root.join(rel_path);
         let resolved_path = match std::fs::canonicalize(&path) {
             Ok(path) => path,
             Err(error) => {
                 if error.kind() != std::io::ErrorKind::NotFound {
                     log::warn!(
                         "[memory_tree::store] failed to resolve chunk file path_hash={}: {error}",
                         redact::redact(rel),
                     );
                 }
                 continue;
             }
         };
         if !resolved_path.starts_with(&canonical_root) {
             log::warn!(
                 "[memory_tree::store] refusing to remove chunk file outside content root path_hash={}",
                 redact::redact(rel),
             );
             continue;
         }
 
         if let Err(error) = std::fs::remove_file(&path) {
             if error.kind() != std::io::ErrorKind::NotFound {
                 log::warn!(
                     "[memory_tree::store] failed to remove chunk file path_hash={}: {error}",
                     redact::redact(rel),
                 );
             }
         }
     }
 }
 
-fn row_to_chunk(row: &rusqlite::Row<'_>) -> rusqlite::Result<Chunk> {
-    let id: String = row.get(0)?;
-    let source_kind_s: String = row.get(1)?;
-    let source_id: String = row.get(2)?;
-    let path_scope: Option<String> = row.get(3)?;
-    let source_ref: Option<String> = row.get(4)?;
-    let owner: String = row.get(5)?;
-    let ts_ms: i64 = row.get(6)?;
-    let trs_ms: i64 = row.get(7)?;
-    let tre_ms: i64 = row.get(8)?;
-    let tags_json: String = row.get(9)?;
-    let content: String = row.get(10)?;
-    let token_count: i64 = row.get(11)?;
-    let seq: i64 = row.get(12)?;
-    let created_ms: i64 = row.get(13)?;
-
-    let source_kind = SourceKind::parse(&source_kind_s).map_err(|e| {
-        rusqlite::Error::FromSqlConversionFailure(1, rusqlite::types::Type::Text, e.into())
-    })?;
-    let timestamp = ms_to_utc(ts_ms)?;
-    let time_range = (ms_to_utc(trs_ms)?, ms_to_utc(tre_ms)?);
-    let created_at = ms_to_utc(created_ms)?;
-    let tags: Vec<String> = serde_json::from_str(&tags_json).map_err(|e| {
-        rusqlite::Error::FromSqlConversionFailure(8, rusqlite::types::Type::Text, Box::new(e))
-    })?;
-
-    Ok(Chunk {
-        id,
-        content,
-        metadata: Metadata {
-            source_kind,
-            source_id,
-            owner,
-            timestamp,
-            time_range,
-            tags,
-            source_ref: source_ref.map(SourceRef::new),
-            path_scope,
-        },
-        token_count: token_count.max(0) as u32,
-        seq_in_source: seq.max(0) as u32,
-        created_at,
-        // partial_message is not stored in SQLite — it's a transient chunker
-        // signal. Chunks read back from DB always get false (the column doesn't
-        // exist; callers that need this flag hold the Chunk in memory).
-        partial_message: false,
-    })
-}
-
-fn ms_to_utc(ms: i64) -> rusqlite::Result<DateTime<Utc>> {
-    Utc.timestamp_millis_opt(ms).single().ok_or_else(|| {
-        rusqlite::Error::FromSqlConversionFailure(
-            0,
-            rusqlite::types::Type::Integer,
-            format!("invalid timestamp ms {ms}").into(),
-        )
-    })
-}
-
 #[path = "connection.rs"]
 mod connection;
 pub(crate) use connection::recover_corrupt_db;
 pub use connection::with_connection;
 #[cfg(test)]
 #[allow(unused_imports)]
 pub(crate) use connection::{
     clear_connection_cache, db_path_for, get_or_init_connection, invalidate_connection,
     is_io_open_error, schema_apply_count_for_path_for_tests, CB_THRESHOLD,
 };
 #[cfg(test)]
 pub(crate) use connection::{is_transient_cold_start, try_cleanup_stale_files};
 
 #[path = "migrations.rs"]
 mod migrations;
 use migrations::{migrate_legacy_embeddings_to_sidecar, purge_global_topic_trees};
 
 #[path = "raw_refs.rs"]
 mod raw_refs;
 pub use raw_refs::{
     get_chunk_content_path, get_chunk_content_pointers, get_chunk_raw_refs,
     get_summary_content_pointers, list_chunk_raw_ref_paths_with_prefix,
     list_summaries_with_content_path, set_chunk_raw_refs, set_chunk_raw_refs_tx, RawRef,
 };
 
-fn normalized_limit(requested: Option<usize>) -> i64 {
-    let clamped = requested
-        .unwrap_or(DEFAULT_LIST_LIMIT)
-        .clamp(1, MAX_LIST_LIMIT);
-    i64::try_from(clamped).unwrap_or(MAX_LIST_LIMIT as i64)
-}
-
 /// Idempotent `ALTER TABLE ADD COLUMN` — treats an existing column as success.
 fn add_column_if_missing(conn: &Connection, table: &str, name: &str, sql_type: &str) -> Result<()> {
     match conn.execute(
         &format!("ALTER TABLE {table} ADD COLUMN {name} {sql_type}"),
         [],
     ) {
         Ok(_) => {
             log::debug!(
                 "[memory::chunk_store] migration: added column {table}.{name} ({sql_type})"
             );
             Ok(())
         }
         Err(err) if err.to_string().contains("duplicate column name") => Ok(()),
         Err(err) => Err(err).with_context(|| format!("Failed to add column {table}.{name}")),
     }
 }
 
 #[path = "embeddings.rs"]
 mod embeddings;
 pub use embeddings::{
     clear_chunk_reembed_skipped, clear_reembed_skipped_for_signature, get_chunk_embedding,
     get_chunk_embedding_for_signature, get_chunk_embeddings_batch,
     get_chunk_embeddings_for_signature_batch, mark_chunk_reembed_skipped, set_chunk_embedding,
     set_chunk_embedding_for_signature,
 };
 #[cfg(test)]
 pub(crate) use embeddings::{embedding_to_blob, REEMBED_SKIP_KEY_MAX_LEN};
 pub(crate) use embeddings::{
     has_uncovered_reembed_work, set_chunk_embedding_for_signature_tx, tree_active_signature,
     validate_reembed_skip_key,
 };
 // ── Phase 2: embedding column accessors ─────────────────────────────────
 
 #[cfg(test)]
 #[path = "store_tests.rs"]
 mod tests;