version = 3
[[package]]
name = "aho-corasick"
version = "0.7.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e37cfd5e7657ada45f742d6e99ca5788580b5c529dc78faf11ece6dc702656f"
dependencies = [
"memchr",
]
[[package]]
name = "any_ascii"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70033777eb8b5124a81a1889416543dddef2de240019b674c81285a2635a7e1e"
[[package]]
name = "anyhow"
version = "1.0.58"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bb07d2053ccdbe10e2af2995a2f116c1330396493dc1269f6a91d0ae82e19704"
[[package]]
name = "approx"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cab112f0a86d568ea0e627cc1d6be74a1e9cd55214684db5561995f6dad897c6"
dependencies = [
"num-traits",
]
[[package]]
name = "atty"
version = "0.2.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8"
dependencies = [
"hermit-abi",
"libc",
"winapi",
]
[[package]]
name = "autocfg"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa"
[[package]]
name = "bio"
version = "0.41.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4a69423e30444738eccc5e54eccee75779dd3f15ecc0469b95d8529d4b6b7586"
dependencies = [
"anyhow",
"approx",
"bio-types",
"bit-set",
"bv",
"bytecount",
"csv",
"custom_derive",
"enum-map",
"fxhash",
"getset",
"itertools",
"itertools-num",
"lazy_static",
"multimap",
"ndarray",
"newtype_derive",
"num-integer",
"num-traits",
"ordered-float",
"petgraph",
"rand",
"regex",
"serde",
"serde_derive",
"statrs",
"strum",
"strum_macros",
"thiserror",
"triple_accel",
"vec_map",
]
[[package]]
name = "bio-types"
version = "0.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "13bc4296477f37f54e4fd21efaf48a7fa40fbb289bfbf338af5fbbe42797acb6"
dependencies = [
"derive-new",
"lazy_static",
"regex",
"strum_macros",
"thiserror",
]
[[package]]
name = "bit-set"
version = "0.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6e11e16035ea35e4e5997b393eacbf6f63983188f7a2ad25bfb13465f5ad59de"
dependencies = [
"bit-vec",
]
[[package]]
name = "bit-vec"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "349f9b6a179ed607305526ca489b34ad0a41aed5f7980fa90eb03160b69598fb"
[[package]]
name = "bitflags"
version = "1.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
[[package]]
name = "bstr"
version = "0.2.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ba3569f383e8f1598449f1a423e72e99569137b47740b1da11ef19af3d5c3223"
dependencies = [
"lazy_static",
"memchr",
"regex-automata",
"serde",
]
[[package]]
name = "bv"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8834bb1d8ee5dc048ee3124f2c7c1afcc6bc9aed03f11e9dfd8c69470a5db340"
dependencies = [
"feature-probe",
"serde",
]
[[package]]
name = "bytecount"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2c676a478f63e9fa2dd5368a42f28bba0d6c560b775f38583c8bbaa7fcd67c9c"
[[package]]
name = "byteorder"
version = "1.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610"
[[package]]
name = "cc"
version = "1.0.73"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2fff2a6927b3bb87f9595d67196a70493f627687a71d87a0d692242c33f58c11"
dependencies = [
"jobserver",
]
[[package]]
name = "cfg-if"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
[[package]]
name = "chrono"
version = "0.4.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "670ad68c9088c2a963aaa298cb369688cf3f9465ce5e2d4ca10e6e0098a1ce73"
dependencies = [
"libc",
"num-integer",
"num-traits",
"time",
"winapi",
]
[[package]]
name = "clap"
version = "3.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9f1fe12880bae935d142c8702d500c63a4e8634b6c3c57ad72bf978fc7b6249a"
dependencies = [
"atty",
"bitflags",
"clap_lex",
"indexmap",
"once_cell",
"strsim",
"termcolor",
"textwrap",
]
[[package]]
name = "clap_lex"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "87eba3c8c7f42ef17f6c659fc7416d0f4758cd3e58861ee63c5fa4a4dde649e4"
dependencies = [
"os_str_bytes",
]
[[package]]
name = "cmake"
version = "0.1.48"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e8ad8cef104ac57b68b89df3208164d228503abbdce70f6880ffa3d970e7443a"
dependencies = [
"cc",
]
[[package]]
name = "cmd_lib"
version = "1.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0ba0f413777386d37f85afa5242f277a7b461905254c1af3c339d4af06800f62"
dependencies = [
"cmd_lib_macros",
"faccess",
"lazy_static",
"log",
"os_pipe",
]
[[package]]
name = "cmd_lib_macros"
version = "1.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9e66605092ff6c6e37e0246601ae6c3f62dc1880e0599359b5f303497c112dc0"
dependencies = [
"proc-macro-error",
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "crossbeam-channel"
version = "0.5.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4c02a4d71819009c192cf4872265391563fd6a84c81ff2c0f2a7026ca4c1d85c"
dependencies = [
"cfg-if",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-deque"
version = "0.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6455c0ca19f0d2fbf751b908d5c55c1f5cbc65e03c4225427254b46890bdde1e"
dependencies = [
"cfg-if",
"crossbeam-epoch",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-epoch"
version = "0.9.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "07db9d94cbd326813772c968ccd25999e5f8ae22f4f8d1b11effa37ef6ce281d"
dependencies = [
"autocfg",
"cfg-if",
"crossbeam-utils",
"memoffset",
"once_cell",
"scopeguard",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8ff1f980957787286a554052d03c7aee98d99cc32e09f6d45f0a814133c87978"
dependencies = [
"cfg-if",
"once_cell",
]
[[package]]
name = "csv"
version = "1.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22813a6dc45b335f9bade10bf7271dc477e81113e89eb251a0bc2a8a81c536e1"
dependencies = [
"bstr",
"csv-core",
"itoa",
"ryu",
"serde",
]
[[package]]
name = "csv-core"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b2466559f260f48ad25fe6317b3c8dac77b5bdb5763ac7d9d6103530663bc90"
dependencies = [
"memchr",
]
[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
[[package]]
name = "derive-new"
version = "0.5.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3418329ca0ad70234b9735dc4ceed10af4df60eff9c8e7b06cb5e520d92c3535"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "either"
version = "1.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e78d4f1cc4ae33bbfc157ed5d5a5ef3bc29227303d595861deb238fcec4e9457"
[[package]]
name = "enum-map"
version = "1.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e893a7ba6116821058dec84a6fb14fb2a97cd8ce5fd0f85d5a4e760ecd7329d9"
dependencies = [
"enum-map-derive",
]
[[package]]
name = "enum-map-derive"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "84278eae0af6e34ff6c1db44c11634a694aafac559ff3080e4db4e4ac35907aa"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "faccess"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "59ae66425802d6a903e268ae1a08b8c38ba143520f227a205edf4e9c7e3e26d5"
dependencies = [
"bitflags",
"libc",
"winapi",
]
[[package]]
name = "feature-probe"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
[[package]]
name = "fixedbitset"
version = "0.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "279fb028e20b3c4c320317955b77c5e0c9701f05a1d309905d6fc702cdc5053e"
[[package]]
name = "form_urlencoded"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5fc25a87fa4fd2094bffb06925852034d90a17f0d1e05197d4956d3555752191"
dependencies = [
"matches",
"percent-encoding",
]
[[package]]
name = "fs-utils"
version = "1.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593"
dependencies = [
"quick-error",
]
[[package]]
name = "fxhash"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c31b6d751ae2c7f11320402d34e41349dd1016f8d5d45e48c4312bc8625af50c"
dependencies = [
"byteorder",
]
[[package]]
name = "getrandom"
version = "0.2.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4eb1a864a501629691edf6c15a593b7a51eebaa1e8468e9ddc623de7c9b58ec6"
dependencies = [
"cfg-if",
"libc",
"wasi 0.11.0+wasi-snapshot-preview1",
]
[[package]]
name = "getset"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e45727250e75cc04ff2846a66397da8ef2b3db8e40e0cef4df67950a07621eb9"
dependencies = [
"proc-macro-error",
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "glob"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9b919933a397b79c37e33b77bb2aa3dc8eb6e165ad809e58ff75bc7db2e34574"
[[package]]
name = "hashbrown"
version = "0.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "db0d4cf898abf0081f964436dc980e96670a0f36863e4b83aaacdb65c9d7ccc3"
[[package]]
name = "heck"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6d621efb26863f0e9924c6ac577e8275e5e6b77455db64ffa6c65c904e9e132c"
dependencies = [
"unicode-segmentation",
]
[[package]]
name = "hermit-abi"
version = "0.1.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "62b467343b94ba476dcb2500d242dadbb39557df889310ac77c5d99100aaac33"
dependencies = [
"libc",
]
[[package]]
name = "hts-sys"
version = "2.0.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "72c443906f4bac8b8cfe67e4e9d9ca83a454b70a092e1764133d19d5c5c7c1e2"
dependencies = [
"cc",
"fs-utils",
"glob",
"libz-sys",
]
[[package]]
name = "idna"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "418a0a6fab821475f634efe3ccc45c013f742efe03d853e8d3355d5cb850ecf8"
dependencies = [
"matches",
"unicode-bidi",
"unicode-normalization",
]
[[package]]
name = "ieee754"
version = "0.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c"
[[package]]
name = "indexmap"
version = "1.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "10a35a97730320ffe8e2d410b5d3b69279b98d2c14bdb8b70ea89ecf7888d41e"
dependencies = [
"autocfg",
"hashbrown",
]
[[package]]
name = "itertools"
version = "0.10.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a9a9d19fa1e79b6215ff29b9d6880b706147f16e9b1dbb1e4e5947b5b02bc5e3"
dependencies = [
"either",
]
[[package]]
name = "itertools-num"
version = "0.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a872a22f9e6f7521ca557660adb96dd830e54f0f490fa115bb55dd69d38b27e7"
dependencies = [
"num-traits",
]
[[package]]
name = "itoa"
version = "0.4.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b71991ff56294aa922b450139ee08b3bfc70982c6b2c7562771375cf73542dd4"
[[package]]
name = "jobserver"
version = "0.1.24"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "af25a77299a7f711a01975c35a6a424eb6862092cc2d6c72c4ed6cbc56dfc1fa"
dependencies = [
"libc",
]
[[package]]
name = "lazy_static"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
[[package]]
name = "lexical-sort"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c09e4591611e231daf4d4c685a66cb0410cc1e502027a20ae55f2bb9e997207a"
dependencies = [
"any_ascii",
]
[[package]]
name = "libc"
version = "0.2.126"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "349d5a591cd28b49e1d1037471617a32ddcda5731b99419008085f72d5a53836"
[[package]]
name = "libm"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "33a33a362ce288760ec6a508b94caaec573ae7d3bbbd91b87aa0bad4456839db"
[[package]]
name = "libz-sys"
version = "1.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9702761c3935f8cc2f101793272e202c72b99da8f4224a19ddcf1279a6450bbf"
dependencies = [
"cc",
"cmake",
"libc",
"pkg-config",
"vcpkg",
]
[[package]]
name = "linear-map"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee"
[[package]]
name = "log"
version = "0.4.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e"
dependencies = [
"cfg-if",
]
[[package]]
name = "matches"
version = "0.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a3e378b66a060d48947b590737b30a1be76706c8dd7b8ba0f2fe3989c68a853f"
[[package]]
name = "matrixmultiply"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "add85d4dd35074e6fedc608f8c8f513a3548619a9024b751949ef0e8e45a4d84"
dependencies = [
"rawpointer",
]
[[package]]
name = "memchr"
version = "2.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d"
[[package]]
name = "memoffset"
version = "0.6.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5aa361d4faea93603064a027415f07bd8e1d5c88c9fbf68bf56a285428fd79ce"
dependencies = [
"autocfg",
]
[[package]]
name = "multimap"
version = "0.8.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e5ce46fe64a9d73be07dcbe690a38ce1b293be448fd8ce1e6c1b8062c9f72c6a"
dependencies = [
"serde",
]
[[package]]
name = "nalgebra"
version = "0.27.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "462fffe4002f4f2e1f6a9dcf12cc1a6fc0e15989014efc02a941d3e0f5dc2120"
dependencies = [
"approx",
"matrixmultiply",
"nalgebra-macros",
"num-complex",
"num-rational",
"num-traits",
"rand",
"rand_distr",
"simba",
"typenum",
]
[[package]]
name = "nalgebra-macros"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "01fcc0b8149b4632adc89ac3b7b31a12fb6099a0317a4eb2ebff574ef7de7218"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "ndarray"
version = "0.15.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dec23e6762830658d2b3d385a75aa212af2f67a4586d4442907144f3bb6a1ca8"
dependencies = [
"matrixmultiply",
"num-complex",
"num-integer",
"num-traits",
"rawpointer",
]
[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
"rustc_version",
]
[[package]]
name = "num-complex"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7ae39348c8bc5fbd7f40c727a9925f03517afd2ab27d46702108b6a7e5414c19"
dependencies = [
"num-traits",
]
[[package]]
name = "num-integer"
version = "0.1.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "225d3389fb3509a24c93f5c29eb6bde2586b98d9f016636dff58d7c6f7569cd9"
dependencies = [
"autocfg",
"num-traits",
]
[[package]]
name = "num-rational"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d41702bd167c2df5520b384281bc111a4b5efcf7fbc4c9c222c815b07e0a6a6a"
dependencies = [
"autocfg",
"num-integer",
"num-traits",
]
[[package]]
name = "num-traits"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "578ede34cf02f8924ab9447f50c28075b4d3e5b269972345e7e0372b38c6cdcd"
dependencies = [
"autocfg",
"libm",
]
[[package]]
name = "num_cpus"
version = "1.13.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "19e64526ebdee182341572e50e9ad03965aa510cd94427a4549448f285e957a1"
dependencies = [
"hermit-abi",
"libc",
]
[[package]]
name = "once_cell"
version = "1.12.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7709cef83f0c1f58f666e746a08b21e0085f7440fa6a29cc194d68aac97a4225"
[[package]]
name = "ordered-float"
version = "1.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3305af35278dd29f46fcdd139e0b1fbfae2153f0e5928b39b035542dd31e37b7"
dependencies = [
"num-traits",
]
[[package]]
name = "os_pipe"
version = "0.9.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fb233f06c2307e1f5ce2ecad9f8121cffbbee2c95428f44ea85222e460d0d213"
dependencies = [
"libc",
"winapi",
]
[[package]]
name = "os_str_bytes"
version = "6.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "21326818e99cfe6ce1e524c2a805c189a99b5ae555a35d19f9a284b427d86afa"
[[package]]
name = "papergrid"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "608b6444acf7f5ea39e8bd06dd6037e34a4b5ddfb29ae840edad49ea798e9e79"
dependencies = [
"unicode-width",
]
[[package]]
name = "paste"
version = "1.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0c520e05135d6e763148b6426a837e239041653ba7becd2e538c076c738025fc"
[[package]]
name = "percent-encoding"
version = "2.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4fd5641d01c8f18a23da7b6fe29298ff4b55afcccdf78973b24cf3175fee32e"
[[package]]
name = "petgraph"
version = "0.6.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6d5014253a1331579ce62aa67443b4a658c5e7dd03d4bc6d302b94474888143"
dependencies = [
"fixedbitset",
"indexmap",
]
[[package]]
name = "pkg-config"
version = "0.3.25"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1df8c4ec4b0627e53bdf214615ad287367e482558cf84b109250b37464dc03ae"
[[package]]
name = "ppv-lite86"
version = "0.2.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "eb9f9e6e233e5c4a35559a617bf40a4ec447db2e84c20b55a6f83167b7e57872"
[[package]]
name = "proc-macro-error"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c"
dependencies = [
"proc-macro-error-attr",
"proc-macro2",
"quote",
"syn",
"version_check",
]
[[package]]
name = "proc-macro-error-attr"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869"
dependencies = [
"proc-macro2",
"quote",
"version_check",
]
[[package]]
name = "proc-macro2"
version = "1.0.40"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dd96a1e8ed2596c337f8eae5f24924ec83f5ad5ab21ea8e455d3566c69fbcaf7"
dependencies = [
"unicode-ident",
]
[[package]]
name = "quick-error"
version = "1.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0"
[[package]]
name = "quote"
version = "1.0.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3bcdf212e9776fbcb2d23ab029360416bb1706b1aea2d1a5ba002727cbcab804"
dependencies = [
"proc-macro2",
]
[[package]]
name = "rand"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404"
dependencies = [
"libc",
"rand_chacha",
"rand_core",
]
[[package]]
name = "rand_chacha"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6c10a63a0fa32252be49d21e7709d4d4baf8d231c2dbce1eaa8141b9b127d88"
dependencies = [
"ppv-lite86",
"rand_core",
]
[[package]]
name = "rand_core"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d34f1408f55294453790c48b2f1ebbb1c5b4b7563eb1f418bcfcfdbb06ebb4e7"
dependencies = [
"getrandom",
]
[[package]]
name = "rand_distr"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32cb0b9bc82b0a0876c2dd994a7e7a2683d3e7390ca40e6886785ef0c7e3ee31"
dependencies = [
"num-traits",
"rand",
]
[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
[[package]]
name = "rayon"
version = "1.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bd99e5772ead8baa5215278c9b15bf92087709e9c1b2d1f97cdb5a183c933a7d"
dependencies = [
"autocfg",
"crossbeam-deque",
"either",
"rayon-core",
]
[[package]]
name = "rayon-core"
version = "1.9.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "258bcdb5ac6dad48491bb2992db6b7cf74878b0384908af124823d118c99683f"
dependencies = [
"crossbeam-channel",
"crossbeam-deque",
"crossbeam-utils",
"num_cpus",
]
[[package]]
name = "regex"
version = "1.5.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d83f127d94bdbcda4c8cc2e50f6f84f4b611f69c902699ca385a39c3a75f9ff1"
dependencies = [
"aho-corasick",
"memchr",
"regex-syntax",
]
[[package]]
name = "regex-automata"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6c230d73fb8d8c1b9c0b3135c5142a8acee3a0558fb8db5cf1cb65f8d7862132"
[[package]]
name = "regex-syntax"
version = "0.6.26"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "49b3de9ec5dc0a3417da371aab17d729997c15010e7fd24ff707773a33bddb64"
[[package]]
name = "rust-htslib"
version = "0.39.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "239ef7334dbf59acd56b7a6fa62a525ed7e36d6239a686ed4ff61bc794108e53"
dependencies = [
"bio-types",
"byteorder",
"custom_derive",
"derive-new",
"hts-sys",
"ieee754",
"lazy_static",
"libc",
"linear-map",
"newtype_derive",
"regex",
"thiserror",
"url",
]
[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
"semver",
]
[[package]]
name = "rustversion"
version = "1.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a0a5f7c728f5d284929a1cccb5bc19884422bfe6ef4d6c409da2c41838983fcf"
[[package]]
name = "ryu"
version = "1.0.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f3f6f92acf49d1b98f7a81226834412ada05458b7364277387724a237f062695"
[[package]]
name = "scopeguard"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd"
[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
[[package]]
name = "serde"
version = "1.0.137"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "61ea8d54c77f8315140a05f4c7237403bf38b72704d031543aa1d16abbf517d1"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_derive"
version = "1.0.137"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1f26faba0c3959972377d3b2d306ee9f71faee9714294e41bb777f83f88578be"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "simba"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8e82063457853d00243beda9952e910b82593e4b07ae9f721b9278a99a0d3d5c"
dependencies = [
"approx",
"num-complex",
"num-traits",
"paste",
]
[[package]]
name = "statrs"
version = "0.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05bdbb8e4e78216a85785a85d3ec3183144f98d0097b9281802c019bb07a6f05"
dependencies = [
"approx",
"lazy_static",
"nalgebra",
"num-traits",
"rand",
]
[[package]]
name = "strsim"
version = "0.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623"
[[package]]
name = "strum"
version = "0.23.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cae14b91c7d11c9a851d3fbc80a963198998c2a64eec840477fa92d8ce9b70bb"
[[package]]
name = "strum_macros"
version = "0.23.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5bb0dc7ee9c15cea6199cde9a127fa16a4c5819af85395457ad72d68edc85a38"
dependencies = [
"heck",
"proc-macro2",
"quote",
"rustversion",
"syn",
]
[[package]]
name = "syn"
version = "1.0.98"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c50aef8a904de4c23c788f104b7dddc7d6f79c647c7c8ce4cc8f73eb0ca773dd"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "tabled"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2407502760ccfd538f2fb1f843dd87b6daf1a17848d57bc5a25617e408ef4c7a"
dependencies = [
"papergrid",
"tabled_derive",
]
[[package]]
name = "tabled_derive"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "278ea3921cee8c5a69e0542998a089f7a14fa43c9c4e4f9951295da89bd0c943"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "termcolor"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bab24d30b911b2376f3a13cc2cd443142f0c81dda04c118693e35b3835757755"
dependencies = [
"winapi-util",
]
[[package]]
name = "textwrap"
version = "0.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b1141d4d61095b28419e22cb0bbf02755f5e54e0526f97f1e3d1d160e60885fb"
[[package]]
name = "thiserror"
version = "1.0.31"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bd829fe32373d27f76265620b5309d0340cb8550f523c1dda251d6298069069a"
dependencies = [
"thiserror-impl",
]
[[package]]
name = "thiserror-impl"
version = "1.0.31"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0396bc89e626244658bef819e22d0cc459e795a5ebe878e6ec336d1674a8d79a"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "tidk"
version = "0.2.1"
dependencies = [
"anyhow",
"bio",
"chrono",
"clap",
"cmd_lib",
"csv",
"itertools",
"lexical-sort",
"rayon",
"rust-htslib",
"serde",
"tabled",
]
[[package]]
name = "time"
version = "0.1.44"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6db9e6914ab8b1ae1c260a4ae7a49b6c5611b40328a735b21862567685e73255"
dependencies = [
"libc",
"wasi 0.10.0+wasi-snapshot-preview1",
"winapi",
]
[[package]]
name = "tinyvec"
version = "1.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "87cc5ceb3875bb20c2890005a4e226a4651264a5c75edb2421b52861a0a0cb50"
dependencies = [
"tinyvec_macros",
]
[[package]]
name = "tinyvec_macros"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cda74da7e1a664f795bb1f8a87ec406fb89a02522cf6e50620d016add6dbbf5c"
[[package]]
name = "triple_accel"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22048bc95dfb2ffd05b1ff9a756290a009224b60b2f0e7525faeee7603851e63"
[[package]]
name = "typenum"
version = "1.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dcf81ac59edc17cc8697ff311e8f5ef2d99fcbd9817b34cec66f90b6c3dfd987"
[[package]]
name = "unicode-bidi"
version = "0.3.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "099b7128301d285f79ddd55b9a83d5e6b9e97c92e0ea0daebee7263e932de992"
[[package]]
name = "unicode-ident"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5bd2fe26506023ed7b5e1e315add59d6f584c621d037f9368fea9cfb988f368c"
[[package]]
name = "unicode-normalization"
version = "0.1.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d54590932941a9e9266f0832deed84ebe1bf2e4c9e4a3554d393d18f5e854bf9"
dependencies = [
"tinyvec",
]
[[package]]
name = "unicode-segmentation"
version = "1.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7e8820f5d777f6224dc4be3632222971ac30164d4a258d595640799554ebfd99"
[[package]]
name = "unicode-width"
version = "0.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3ed742d4ea2bd1176e236172c8429aaf54486e7ac098db29ffe6529e0ce50973"
[[package]]
name = "url"
version = "2.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a507c383b2d33b5fc35d1861e77e6b383d158b2da5e14fe51b83dfedf6fd578c"
dependencies = [
"form_urlencoded",
"idna",
"matches",
"percent-encoding",
]
[[package]]
name = "vcpkg"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426"
[[package]]
name = "vec_map"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1bddf1187be692e79c5ffeab891132dfb0f236ed36a43c7ed39f1165ee20191"
dependencies = [
"serde",
]
[[package]]
name = "version_check"
version = "0.9.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f"
[[package]]
name = "wasi"
version = "0.10.0+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1a143597ca7c7793eff794def352d41792a93c481eb1042423ff7ff72ba2c31f"
[[package]]
name = "wasi"
version = "0.11.0+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423"
[[package]]
name = "winapi"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419"
dependencies = [
"winapi-i686-pc-windows-gnu",
"winapi-x86_64-pc-windows-gnu",
]
[[package]]
name = "winapi-i686-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
[[package]]
name = "winapi-util"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178"
dependencies = [
"winapi",
]
[[package]]
name = "winapi-x86_64-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"