survival 1.1.33

A high-performance survival analysis library written in Rust with Python bindings
Documentation
#![allow(dead_code)]
use numpy::{PyReadonlyArray1, PyUntypedArrayMethods};
use pyo3::prelude::*;

pub struct ZeroCopyF64<'py> {
    _array: PyReadonlyArray1<'py, f64>,
}

impl<'py> ZeroCopyF64<'py> {
    pub fn new(obj: &Bound<'py, PyAny>) -> PyResult<Self> {
        if let Ok(arr) = obj.extract::<PyReadonlyArray1<'py, f64>>() {
            return Ok(Self { _array: arr });
        }
        if let Ok(values) = obj.getattr("values")
            && let Ok(arr) = values.extract::<PyReadonlyArray1<'py, f64>>()
        {
            return Ok(Self { _array: arr });
        }
        if let Ok(to_numpy) = obj.getattr("to_numpy")
            && let Ok(arr_obj) = to_numpy.call0()
            && let Ok(arr) = arr_obj.extract::<PyReadonlyArray1<'py, f64>>()
        {
            return Ok(Self { _array: arr });
        }
        let type_name = obj
            .get_type()
            .name()
            .map(|s| s.to_string())
            .unwrap_or_else(|_| "unknown".to_string());
        Err(PyErr::new::<pyo3::exceptions::PyTypeError, _>(format!(
            "Cannot borrow '{}' as float array (zero-copy). Expected: numpy array. \
             For pandas/polars, call .to_numpy() first.",
            type_name
        )))
    }

    pub fn as_slice(&self) -> PyResult<&[f64]> {
        self._array.as_slice().map_err(|e| {
            PyErr::new::<pyo3::exceptions::PyValueError, _>(format!(
                "Array is not contiguous: {}",
                e
            ))
        })
    }

    pub fn len(&self) -> usize {
        self._array.len()
    }

    pub fn is_empty(&self) -> bool {
        self._array.is_empty()
    }
}

pub struct ZeroCopyI64<'py> {
    _array: PyReadonlyArray1<'py, i64>,
}

impl<'py> ZeroCopyI64<'py> {
    pub fn new(obj: &Bound<'py, PyAny>) -> PyResult<Self> {
        if let Ok(arr) = obj.extract::<PyReadonlyArray1<'py, i64>>() {
            return Ok(Self { _array: arr });
        }
        if let Ok(values) = obj.getattr("values")
            && let Ok(arr) = values.extract::<PyReadonlyArray1<'py, i64>>()
        {
            return Ok(Self { _array: arr });
        }
        if let Ok(to_numpy) = obj.getattr("to_numpy")
            && let Ok(arr_obj) = to_numpy.call0()
            && let Ok(arr) = arr_obj.extract::<PyReadonlyArray1<'py, i64>>()
        {
            return Ok(Self { _array: arr });
        }
        let type_name = obj
            .get_type()
            .name()
            .map(|s| s.to_string())
            .unwrap_or_else(|_| "unknown".to_string());
        Err(PyErr::new::<pyo3::exceptions::PyTypeError, _>(format!(
            "Cannot borrow '{}' as int64 array (zero-copy). Expected: numpy array (int64). \
             For pandas/polars, call .to_numpy() first.",
            type_name
        )))
    }

    pub fn as_slice(&self) -> PyResult<&[i64]> {
        self._array.as_slice().map_err(|e| {
            PyErr::new::<pyo3::exceptions::PyValueError, _>(format!(
                "Array is not contiguous: {}",
                e
            ))
        })
    }

    pub fn len(&self) -> usize {
        self._array.len()
    }

    pub fn is_empty(&self) -> bool {
        self._array.is_empty()
    }
}

pub fn try_borrow_f64<'py>(obj: &Bound<'py, PyAny>) -> Option<PyReadonlyArray1<'py, f64>> {
    if let Ok(arr) = obj.extract::<PyReadonlyArray1<'py, f64>>()
        && arr.as_slice().is_ok()
    {
        return Some(arr);
    }
    None
}

pub fn try_borrow_i64<'py>(obj: &Bound<'py, PyAny>) -> Option<PyReadonlyArray1<'py, i64>> {
    if let Ok(arr) = obj.extract::<PyReadonlyArray1<'py, i64>>()
        && arr.as_slice().is_ok()
    {
        return Some(arr);
    }
    None
}

pub fn try_borrow_i32<'py>(obj: &Bound<'py, PyAny>) -> Option<PyReadonlyArray1<'py, i32>> {
    if let Ok(arr) = obj.extract::<PyReadonlyArray1<'py, i32>>()
        && arr.as_slice().is_ok()
    {
        return Some(arr);
    }
    None
}

pub fn extract_vec_f64(obj: &Bound<'_, PyAny>) -> PyResult<Vec<f64>> {
    if let Ok(arr) = obj.extract::<PyReadonlyArray1<'_, f64>>() {
        return Ok(arr.as_slice()?.to_vec());
    }
    if let Ok(list) = obj.extract::<Vec<f64>>() {
        return Ok(list);
    }
    if let Ok(values) = obj.getattr("values")
        && let Ok(arr) = values.extract::<PyReadonlyArray1<'_, f64>>()
    {
        return Ok(arr.as_slice()?.to_vec());
    }
    if let Ok(to_numpy) = obj.getattr("to_numpy")
        && let Ok(arr_obj) = to_numpy.call0()
        && let Ok(arr) = arr_obj.extract::<PyReadonlyArray1<'_, f64>>()
    {
        return Ok(arr.as_slice()?.to_vec());
    }
    let type_name = obj
        .get_type()
        .name()
        .map(|s| s.to_string())
        .unwrap_or_else(|_| "unknown".to_string());
    Err(PyErr::new::<pyo3::exceptions::PyTypeError, _>(format!(
        "Cannot convert '{}' to float array. Expected: numpy array, pandas Series, polars Series, or list of floats. \
         Tip: For pandas/polars, ensure the column contains numeric data.",
        type_name
    )))
}

pub fn extract_vec_i32(obj: &Bound<'_, PyAny>) -> PyResult<Vec<i32>> {
    if let Ok(arr) = obj.extract::<PyReadonlyArray1<'_, i32>>() {
        return Ok(arr.as_slice()?.to_vec());
    }
    if let Ok(arr) = obj.extract::<PyReadonlyArray1<'_, i64>>() {
        return Ok(arr.as_slice()?.iter().map(|&x| x as i32).collect());
    }
    if let Ok(list) = obj.extract::<Vec<i32>>() {
        return Ok(list);
    }
    if let Ok(list) = obj.extract::<Vec<i64>>() {
        return Ok(list.into_iter().map(|x| x as i32).collect());
    }
    if let Ok(values) = obj.getattr("values")
        && let Ok(arr) = values.extract::<PyReadonlyArray1<'_, i32>>()
    {
        return Ok(arr.as_slice()?.to_vec());
    }
    if let Ok(values) = obj.getattr("values")
        && let Ok(arr) = values.extract::<PyReadonlyArray1<'_, i64>>()
    {
        return Ok(arr.as_slice()?.iter().map(|&x| x as i32).collect());
    }
    if let Ok(to_numpy) = obj.getattr("to_numpy")
        && let Ok(arr_obj) = to_numpy.call0()
        && let Ok(arr) = arr_obj.extract::<PyReadonlyArray1<'_, i32>>()
    {
        return Ok(arr.as_slice()?.to_vec());
    }
    if let Ok(to_numpy) = obj.getattr("to_numpy")
        && let Ok(arr_obj) = to_numpy.call0()
        && let Ok(arr) = arr_obj.extract::<PyReadonlyArray1<'_, i64>>()
    {
        return Ok(arr.as_slice()?.iter().map(|&x| x as i32).collect());
    }
    let type_name = obj
        .get_type()
        .name()
        .map(|s| s.to_string())
        .unwrap_or_else(|_| "unknown".to_string());
    Err(PyErr::new::<pyo3::exceptions::PyTypeError, _>(format!(
        "Cannot convert '{}' to integer array. Expected: numpy array (int32/int64), pandas Series, polars Series, or list of integers. \
         Tip: For status/group columns, ensure values are integers (0, 1, etc.).",
        type_name
    )))
}

pub fn extract_optional_vec_f64(obj: Option<&Bound<'_, PyAny>>) -> PyResult<Option<Vec<f64>>> {
    match obj {
        Some(o) => Ok(Some(extract_vec_f64(o)?)),
        None => Ok(None),
    }
}

pub fn extract_optional_vec_i32(obj: Option<&Bound<'_, PyAny>>) -> PyResult<Option<Vec<i32>>> {
    match obj {
        Some(o) => Ok(Some(extract_vec_i32(o)?)),
        None => Ok(None),
    }
}