supercov 0.0.45

Coverage for coding agents and software factories 🌙
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use serde_json::{Value, json};
use std::{collections::BTreeSet, process::ExitCode};
use supercov_engine::{
    agent_json, assertion_store as maps,
    run_store::{discover_runs, select_run},
};

const HELP: &str = r#"Usage: supercov runs <run> assertions [options]
       supercov runs <run> assertion <id> [--json]
       supercov runs <run> source <path> [--offset <n>] [--limit <n>] [--json]
       supercov runs <run> assertions <action> [options]

assertions                  List assertions, including sites without flows, with freshness and execution status.
assertion <id>              Read one assertion, its authored flows and execution evidence.
source <path>               Read matching current project source with line numbers.

Assertion actions:
validate                    Check syntax/references; return expectedBasis tokens without changing files.
  --view flows|changes|errors Page validation output for large maps (default: all).
files                       List run input paths, byte sizes and SHA-256 hashes.
report [--view <view>]      summary (default), assertions, statements, tests,
                            creditedLines, unassertedLines, changes.
check                       Fail on invalid references, dirty flows, failed run,
                            pending change impact assessment or a stale/unavailable working tree.
  --require-mappings        Require a current explanation for each observed recognized site.
  --require-observed        Also require passing runtime evidence for every mapped site/flow.
  --min <0..100>             Minimum agent-assessed statement percentage.

--needs-attention           List assertions with no flows, stale/draft flows or open questions.
--file <path>               Filter assertion lists or statement/line report views.
--offset <n> --limit <n>     Page lists or source (zero-based offset, limit 1..1000).
--json                      Structured output for integrations; source uses {line, text} items.

supercov assertions schema [--json]               Export the JSON Schema.
supercov assertions validate --file <path> [--json] Check JSON shape without a run.

Each new test run creates assertions.json and reuses the newest available map
for the same command and language. Edit the file, validate, copy examined expectedBasis tokens into it, then check.
Exit 0 means the requested check passed; exit 2 means invalid input or an unmet gate.
Pin a run ID while authoring. See docs/assertion-maps.md and docs/assertion-agent.md.
Supercov never authors semantic edges. MC/DC remains separate.
"#;
const SOURCE_HELP: &str = "Usage: supercov runs <run> source <path> [--offset <n>] [--limit <n>] [--json]\n\nRead the current project file after verifying it matches the run. The path is project-relative.\n--offset is zero-based; --limit defaults to 20 (1..1000). --json returns line/text items.\nUse runs <run> assertions files to list run input paths.\n";
const ASSERTION_HELP: &str = "Usage: supercov runs <run> assertion <id> [--json]\n\nRead one assertion and its authored flows, flow freshness and passing execution evidence.\nUse runs <run> assertions to list IDs.\n";
struct Options {
    action: String,
    require_mappings: bool,
    require_observed: bool,
    minimum: Option<f64>,
    file: Option<String>,
    view: String,
    needs_attention: bool,
    offset: usize,
    limit: usize,
}
fn parse(args: &[String]) -> Result<Options, String> {
    let mut o = Options {
        action: "report".into(),
        require_mappings: false,
        require_observed: false,
        minimum: None,
        file: None,
        view: "assertions".into(),
        needs_attention: false,
        offset: 0,
        limit: 20,
    };
    let mut args = args.iter().peekable();
    if args.peek().is_some_and(|a| !a.starts_with('-')) {
        o.action = args.next().unwrap().clone();
        o.view = "summary".into();
    }
    let mut seen = BTreeSet::new();
    while let Some(arg) = args.next() {
        if !seen.insert(arg.as_str()) {
            return Err(format!("Duplicate option: {arg}"));
        }
        match arg.as_str() {
            "--json" => (),
            "--needs-attention" => o.needs_attention = true,
            "--require-mappings" => o.require_mappings = true,
            "--require-observed" => o.require_observed = true,
            "--archived" => return Err("--archived is removed: assertion analysis requires current files matching the run; rerun tests to inherit previous mappings".into()),
            "--file" | "--view" | "--offset" | "--limit" | "--min" => {
                let value = args
                    .next()
                    .filter(|v| !v.starts_with('-'))
                    .ok_or_else(|| format!("{arg} requires a value"))?;
                match arg.as_str() {
                    "--min" => o.minimum = Some(value.parse().map_err(|_| "Invalid minimum")?),
                    "--file" => o.file = Some(value.clone()),
                    "--view" => o.view = value.clone(),
                    "--offset" => o.offset = value.parse().map_err(|_| "Invalid offset")?,
                    "--limit" => o.limit = value.parse().map_err(|_| "Invalid limit")?,
                    _ => unreachable!(),
                }
            }
            _ => return Err(format!("Unknown option: {arg}")),
        }
    }
    if !matches!(o.action.as_str(), "report" | "validate" | "check" | "files") {
        return Err(match o.action.as_str() {
            "review" => "The review command is removed: edit assertions.json and copy expectedBasis from assertions validate after examining the claims".into(),
            "inventory" => {
                "Use runs <run> assertions to list all assertion sites and their status".into()
            }
            "source" => "Use runs <run> source <path> to read matching current source".into(),
            _ => "Unknown assertions action".into(),
        });
    }
    if o.minimum
        .is_some_and(|n| !n.is_finite() || !(0.0..=100.0).contains(&n))
    {
        return Err("min must be a finite percentage from 0 to 100".into());
    }
    if o.limit == 0 || o.limit > 1000 {
        return Err("limit must be 1..1000".into());
    }
    for (flag, valid) in [
        ("--min", o.action == "check"),
        ("--require-mappings", o.action == "check"),
        ("--require-observed", o.action == "check"),
        (
            "--needs-attention",
            o.action == "report" && o.view == "assertions",
        ),
        (
            "--file",
            o.action == "report"
                && matches!(
                    o.view.as_str(),
                    "assertions" | "statements" | "creditedLines" | "unassertedLines"
                ),
        ),
        ("--view", matches!(o.action.as_str(), "report" | "validate")),
    ] {
        if seen.contains(flag) && !valid {
            return Err(format!("{flag} is not valid for {}", o.action));
        }
    }
    if (seen.contains("--offset") || seen.contains("--limit"))
        && !(matches!(o.action.as_str(), "report" | "files")
            || o.action == "validate" && o.view != "summary")
    {
        return Err(
            "Pagination requires a list, files, or validate --view flows|changes|errors".into(),
        );
    }
    let view_valid = if o.action == "validate" {
        matches!(o.view.as_str(), "summary" | "flows" | "changes" | "errors")
    } else {
        matches!(
            o.view.as_str(),
            "summary"
                | "assertions"
                | "statements"
                | "tests"
                | "creditedLines"
                | "unassertedLines"
                | "changes"
        )
    };
    if !view_valid {
        return Err("Unknown view for this action".into());
    }
    if o.action == "report"
        && o.view == "summary"
        && (seen.contains("--offset") || seen.contains("--limit"))
    {
        return Err("Pagination requires an array view, not summary".into());
    }
    Ok(o)
}
fn needs_attention(row: &Value) -> bool {
    row["questions"].as_array().is_some_and(|q| !q.is_empty())
        || row["flows"].as_array().is_none_or(|flows| {
            flows.is_empty()
                || flows
                    .iter()
                    .any(|f| f["current"] != true || f["eligible"] != true)
        })
}
fn page(values: &[Value], offset: usize, limit: usize) -> Value {
    let items = values
        .iter()
        .skip(offset)
        .take(limit)
        .cloned()
        .collect::<Vec<_>>();
    let next = offset.saturating_add(items.len());
    json!({"items":items,"pagination":{"offset":offset,"returned":items.len(),"total":values.len(),"nextOffset":if next<values.len(){Some(next)}else{None}}})
}
pub fn command(args: &[String]) -> ExitCode {
    if matches!(
        args.get(1).map(String::as_str),
        Some("source" | "assertion")
    ) {
        return inspection_command(args);
    }
    if args.iter().any(|a| matches!(a.as_str(), "--help" | "-h")) {
        print!("{HELP}");
        return ExitCode::SUCCESS;
    }
    let result = (|| -> Result<Value, String> {
        let o = parse(&args[2..])?;
        let root = std::env::current_dir().map_err(|e| e.to_string())?;
        let inventory = discover_runs(&root).map_err(|e| e.to_string())?;
        let run = select_run(&inventory, Some(&args[0])).map_err(|e| e.to_string())?;
        let working_tree = working_tree(&root, run);
        if o.action != "files" {
            require_current(&working_tree)?;
        }
        let mut check_report = None;
        let mut data = match o.action.as_str() {
            "files" => {
                let input = maps::load_manifest(run)?;
                let values = input
                    .manifest
                    .files
                    .iter()
                    .map(|(file, fingerprint)| json!({"file":file,"bytes":fingerprint.bytes,"sha256":fingerprint.sha256}))
                    .collect::<Vec<_>>();
                let mut data = page(&values, o.offset, o.limit);
                data["revision"] = json!(input.evidence_digest);
                data["view"] = json!("files");
                data
            }
            "validate" => {
                let input = maps::load_inputs(&root, run)?;
                let bytes =
                    std::fs::read(run.directory.join(maps::MAP_FILE)).map_err(|e| e.to_string())?;
                match supercov_engine::assertion_map::parse(&bytes) {
                    Err(error) => json!({"valid":false,"stage":"syntax","errors":[error]}),
                    Ok(_) => {
                        let (map, state) = maps::load(run, &input)?;
                        let mut data =
                            supercov_engine::assertion_map::validation(&map, &state, &input.inputs);
                        data["revision"] = json!(supercov_engine::assertion_map::digest(&(
                            &map,
                            &state,
                            &input.evidence_digest
                        )));
                        if o.view != "summary" {
                            let mut paged =
                                page(data[&o.view].as_array().unwrap(), o.offset, o.limit);
                            for key in ["valid", "stage", "meaning", "revision"] {
                                paged[key] = data[key].clone();
                            }
                            paged["view"] = json!(o.view);
                            paged["errorCount"] = json!(data["errors"].as_array().unwrap().len());
                            paged
                        } else {
                            data
                        }
                    }
                }
            }
            _ => {
                let report = maps::report(&root, run)?;
                let mut data = if o.view == "summary" {
                    json!({})
                } else {
                    let values = report[&o.view]
                        .as_array()
                        .unwrap()
                        .iter()
                        .filter(|row| {
                            o.file.as_ref().is_none_or(|file| {
                                row["file"].as_str().or_else(|| row["at"]["file"].as_str())
                                    == Some(file.as_str())
                            })
                        })
                        .filter(|row| !o.needs_attention || needs_attention(row))
                        .cloned()
                        .collect::<Vec<_>>();
                    page(&values, o.offset, o.limit)
                };
                for key in [
                    "summary",
                    "basis",
                    "validationErrors",
                    "limitations",
                    "revision",
                    "inheritance",
                ] {
                    data[key] = report[key].clone();
                }
                data["view"] = json!(o.view);
                data["file"] = json!(o.file);
                data["needsAttention"] = json!(o.needs_attention);
                data["scope"] = json!(
                    "summary covers the whole run with matching current source; --file filters items only"
                );
                if o.action == "check" {
                    check_report = Some(report);
                }
                data
            }
        };
        data["workingTree"] = working_tree;
        if let Some(report) = check_report {
            let failures = check_failures(&report, &data["workingTree"], &o);
            data["valid"] = json!(failures.is_empty());
            data["failures"] = json!(failures);
            data["requirements"] = json!({"mappings":o.require_mappings,"observed":o.require_observed,"minimum":o.minimum});
        }
        data["run"] = json!(run.id);
        data["map"] = json!(run.directory.join(maps::MAP_FILE));
        Ok(data)
    })();
    emit(
        result,
        args.iter().any(|a| a == "--json"),
        "coverage.assertions",
    )
}
fn require_current(tree: &Value) -> Result<(), String> {
    if tree["stale"] != false {
        return Err("Current checkout differs from the run or cannot be verified; rerun tests to inherit the assertion map for current files".into());
    }
    Ok(())
}
fn working_tree(root: &std::path::Path, run: &supercov_engine::run_store::StoredRun) -> Value {
    match super::current_integrity_for_run(root, run) {
        Some(current) => {
            let comparison = supercov_engine::run_store::compare_run_integrity(
                Some(&run.metadata.integrity),
                &current,
            );
            json!({"stale":comparison.stale,"reasons":comparison.reasons})
        }
        None => json!({"stale":null,"reason":"current source integrity unavailable"}),
    }
}

struct Inspection {
    selector: String,
    offset: usize,
    limit: usize,
}
fn parse_inspection(args: &[String], source: bool) -> Result<Inspection, String> {
    let (selector, flags) = args
        .split_first()
        .filter(|(s, _)| !s.starts_with('-'))
        .ok_or(if source {
            "source requires a project-relative path"
        } else {
            "assertion requires an ID"
        })?;
    let mut o = Inspection {
        selector: selector.clone(),
        offset: 0,
        limit: 20,
    };
    let mut flags = flags.iter();
    let mut seen = BTreeSet::new();
    while let Some(flag) = flags.next() {
        if !seen.insert(flag) {
            return Err(format!("Duplicate option: {flag}"));
        }
        match flag.as_str() {
            "--json" => (),
            "--offset" | "--limit" if source => {
                let value = flags
                    .next()
                    .ok_or_else(|| format!("{flag} requires a value"))?
                    .parse::<usize>()
                    .map_err(|_| format!("Invalid {flag}"))?;
                if flag == "--offset" {
                    o.offset = value;
                } else {
                    o.limit = value;
                }
            }
            _ => return Err(format!("Unexpected argument: {flag}")),
        }
    }
    if o.limit == 0 || o.limit > 1000 {
        return Err("limit must be 1..1000".into());
    }
    Ok(o)
}
fn inspection_command(args: &[String]) -> ExitCode {
    let source = args[1] == "source";
    if args.iter().any(|a| matches!(a.as_str(), "--help" | "-h")) {
        print!("{}", if source { SOURCE_HELP } else { ASSERTION_HELP });
        return ExitCode::SUCCESS;
    }
    let result = (|| -> Result<Value, String> {
        let o = parse_inspection(&args[2..], source)?;
        let root = std::env::current_dir().map_err(|e| e.to_string())?;
        let runs = discover_runs(&root).map_err(|e| e.to_string())?;
        let run = select_run(&runs, Some(&args[0])).map_err(|e| e.to_string())?;
        let working_tree = working_tree(&root, run);
        require_current(&working_tree)?;
        let mut data = if source {
            let input = maps::load_inputs(&root, run)?;
            let text =
                input.inputs.files.get(&o.selector).ok_or_else(|| {
                    format!("File absent from run input manifest: {}", o.selector)
                })?;
            let lines = text
                .lines()
                .enumerate()
                .map(|(i, text)| json!({"line":i+1,"text":text}))
                .collect::<Vec<_>>();
            let mut data = page(&lines, o.offset, o.limit);
            data["file"] = json!(o.selector);
            data["revision"] = json!(input.evidence_digest);
            data["view"] = json!("source");
            data
        } else {
            let report = maps::assertion(&root, run, &o.selector)?;
            let mut data = json!({"view":"assertion", "assertion":report["assertion"],
                "map":run.directory.join(maps::MAP_FILE)});
            for key in [
                "summary",
                "basis",
                "validationErrors",
                "limitations",
                "revision",
                "inheritance",
            ] {
                data[key] = report[key].clone();
            }
            let witnessed = report["assertion"]["observedPassingTests"]
                .as_array()
                .unwrap();
            data["tests"] = json!(
                report["tests"]
                    .as_array()
                    .unwrap()
                    .iter()
                    .filter(|test| witnessed.contains(&test["id"]))
                    .collect::<Vec<_>>()
            );
            data
        };
        data["run"] = json!(run.id);
        data["workingTree"] = working_tree;
        Ok(data)
    })();
    emit(
        result,
        args.iter().any(|a| a == "--json"),
        if source {
            "coverage.source"
        } else {
            "coverage.assertion"
        },
    )
}
fn emit(result: Result<Value, String>, json_output: bool, command: &str) -> ExitCode {
    match result {
        Ok(data) => {
            let invalid = data.get("valid") == Some(&Value::Bool(false));
            if json_output {
                match agent_json::success(command, &data, None) {
                    Ok(output) => print!("{output}"),
                    Err(size) => {
                        print!("{}",agent_json::failure(Some(command), &agent_json::AgentError {
                            code:agent_json::ErrorCode::ResponseTooLarge,
                            message:"Response too large; reduce --limit or use the text view (omit --json)".into(),
                            retryable:false,details:Some(json!({"actualBytes":size.actual_bytes,"maxBytes":size.max_bytes})),
                        }));
                        return ExitCode::from(2);
                    }
                }
            } else if let Some(output) = super::assertions_human::render(&data) {
                print!("{output}");
            } else {
                println!("{}", serde_json::to_string_pretty(&data).unwrap());
            }
            if invalid {
                ExitCode::from(2)
            } else {
                ExitCode::SUCCESS
            }
        }
        Err(message) => {
            if json_output {
                print!(
                    "{}",
                    agent_json::failure(
                        Some(command),
                        &agent_json::AgentError {
                            code: agent_json::ErrorCode::InvalidArgument,
                            message,
                            retryable: false,
                            details: None
                        }
                    )
                );
            } else {
                eprintln!("[supercov] {message}");
            }
            ExitCode::from(2)
        }
    }
}

fn check_failures(report: &Value, working_tree: &Value, o: &Options) -> Vec<String> {
    let s = &report["summary"];
    let mut failures = Vec::new();
    if report["validationErrors"]
        .as_array()
        .is_none_or(|a| !a.is_empty())
    {
        failures.push("Map has invalid references".into());
    }
    if s["runPassed"] != true {
        failures.push("Run did not pass".into());
    }
    if ["draftFlows", "staleFlows", "invalidFlows", "questions"]
        .iter()
        .any(|key| s[key].as_u64().unwrap_or(0) != 0)
    {
        failures.push("Flows or questions need investigation or reference repair".into());
    }
    if s["pendingChanges"].as_u64().unwrap_or(0) != 0 {
        failures.push("Source changes require impact assessment".into());
    }
    if working_tree["stale"] != false {
        failures.push(
            "Working tree is stale or its integrity is unavailable; rerun tests to refresh the map automatically"
                .into(),
        );
    }
    if o.require_mappings
        && (s["observedAssertionsWithoutCurrentExplanation"].as_u64() != Some(0)
            || s["inventoryFailures"].as_u64() != Some(0))
    {
        failures.push(
            "Observed recognized assertions lack current explanations, or assertion discovery failed".into(),
        );
    }
    if o.require_observed
        && (s["unobservedAssertions"].as_u64() != Some(0)
            || report["assertions"].as_array().is_none_or(|rows| {
                rows.iter().any(|a| {
                    a["flows"].as_array().is_none_or(|flows| {
                        flows.iter().any(|f| {
                            f["selectors"].as_array().is_none_or(|v| {
                                v.is_empty() || v.iter().any(|s| s["status"] != "observed")
                            })
                        })
                    })
                })
            }))
    {
        failures.push("Assertions or appliesTo flows lack matching passing runtime evidence; inspect runs <run> assertions".into());
    }
    if let Some(minimum) = o.minimum
        && s["statements"]["percentage"]
            .as_f64()
            .is_none_or(|n| n < minimum)
    {
        failures.push(format!(
            "Statement assertion coverage is below {minimum}% or is not available"
        ));
    }
    failures
}

pub fn global_command(args: &[String]) -> ExitCode {
    if args.is_empty() || args.iter().any(|a| matches!(a.as_str(), "--help" | "-h")) {
        print!("{HELP}");
        return ExitCode::SUCCESS;
    }
    let json_output = args.iter().any(|a| a == "--json");
    let args = args
        .iter()
        .filter(|a| a.as_str() != "--json")
        .map(String::as_str)
        .collect::<Vec<_>>();
    let result = match args.as_slice() {
        ["schema"] => Ok(supercov_engine::assertion_map::schema()),
        ["validate", "--file", file] => std::fs::read(file).map_err(|e| format!("{file}: {e}")).map(|bytes| {
            match supercov_engine::assertion_map::parse(&bytes) {
                Ok(_) => json!({"valid":true,"stage":"syntax","errors":[],"meaning":"JSON shape only; use runs <run> assertions validate for IDs, links and current source references"}),
                Err(error) => json!({"valid":false,"stage":"syntax","errors":[error]}),
            }
        }),
        _ => Err("Use assertions schema or assertions validate --file <path>; run-owned commands need runs <run> assertions".into()),
    };
    emit(result, json_output, "coverage.assertions")
}

#[cfg(test)]
mod tests {
    use super::*;
    #[test]
    fn rejects_ignored_or_ambiguous_options() {
        for args in [
            vec!["review"],
            vec!["report", "--from", "old"],
            vec!["init"],
            vec!["review", "--all", "--flow", "a/f"],
            vec!["source"],
            vec!["report", "--limit", "0"],
            vec!["report", "--limit", "20"],
            vec!["validate", "--min", "50"],
            vec!["review", "--require-mappings"],
            vec!["check", "--min", "NaN"],
            vec!["check", "--min", "101"],
        ] {
            assert!(parse(&args.iter().map(|s| s.to_string()).collect::<Vec<_>>()).is_err());
        }
    }

    #[test]
    fn defaults_to_assertion_list_and_keeps_explicit_summary() {
        assert_eq!(parse(&[]).unwrap().view, "assertions");
        assert_eq!(parse(&["report".into()]).unwrap().view, "summary");
        assert!(
            parse(&[
                "--file".into(),
                "tests/a.ts".into(),
                "--limit".into(),
                "2".into()
            ])
            .is_ok()
        );
    }

    #[test]
    fn positional_resources_reject_ignored_flags_and_invalid_paging() {
        for (source, args) in [
            (true, vec![]),
            (false, vec![]),
            (true, vec!["a.ts", "--file", "b.ts"]),
            (true, vec!["a.ts", "--limit", "0"]),
            (true, vec!["a.ts", "--offset", "-1"]),
            (true, vec!["a.ts", "--limit", "1001"]),
            (true, vec!["a.ts", "--offset"]),
            (true, vec!["a.ts", "--json", "--json"]),
            (true, vec!["a.ts", "b.ts"]),
            (false, vec!["a_id", "--offset", "1"]),
            (false, vec!["a_id", "--view", "summary"]),
        ] {
            assert!(
                parse_inspection(
                    &args.iter().map(|s| s.to_string()).collect::<Vec<_>>(),
                    source
                )
                .is_err()
            );
        }
        let source = parse_inspection(
            &[
                "tests/a b.ts".into(),
                "--offset".into(),
                "33".into(),
                "--limit".into(),
                "4".into(),
            ],
            true,
        )
        .unwrap();
        assert_eq!(source.selector, "tests/a b.ts");
        assert_eq!((source.offset, source.limit), (33, 4));
        assert!(parse_inspection(&["a_id".into(), "--json".into()], false).is_ok());
    }

    #[test]
    fn checks_require_requested_mappings_evidence_and_current_checkout() {
        let mut report = json!({"validationErrors":[],"assertions":[],"summary":{
            "runPassed":true,"draftFlows":0,"staleFlows":0,"invalidFlows":0,"pendingChanges":0,"observedAssertionsWithoutCurrentExplanation":1,
            "inventoryFailures":0,"unobservedAssertions":1,"statements":{"percentage":50}
        }});
        let mut options = parse(&["check".into()]).unwrap();
        assert!(check_failures(&report, &json!({"stale":false}), &options).is_empty());
        options.require_mappings = true;
        options.require_observed = true;
        options.minimum = Some(60.0);
        assert_eq!(
            check_failures(&report, &json!({"stale":true}), &options).len(),
            4
        );
        assert_eq!(
            check_failures(&report, &json!({"stale":null}), &options).len(),
            4
        );
        report["summary"]["observedAssertionsWithoutCurrentExplanation"] = json!(0);
        report["summary"]["unobservedAssertions"] = json!(0);
        options.minimum = Some(50.0);
        assert_eq!(
            check_failures(&report, &json!({"stale":null}), &options).len(),
            1
        );
        assert!(parse(&["check".into(), "--archived".into()]).is_err());
        report["summary"]["statements"]["percentage"] = Value::Null;
        assert_eq!(
            check_failures(&report, &json!({"stale":false}), &options).len(),
            1
        );
    }
}