stratiphy 0.1.5

Phenotype-driven identification of disease subgroups
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28

use std::io::Read;

use prost::Message;

use crate::io::generated::stratiphy_model::Cohort as PbCohort;
use crate::io::generated::stratiphy_workflow::StratiphyResult as PbStratiphyResult;
use crate::model::Cohort;
use crate::workflow::StratiphyResult;

pub fn parse_stratiphy_result(mut read: impl Read) -> Result<StratiphyResult, String> {
    let mut buf = Vec::new();
    read.read_to_end(&mut buf).map_err(|e| e.to_string())?;

    match PbStratiphyResult::decode(&buf[..]) {
        Ok(msg) => StratiphyResult::try_from(msg),
        Err(err) => Err(err.to_string()),
    }
}

pub fn parse_cohort(mut read: impl Read) -> Result<Cohort, String> {
    let mut buf = Vec::new();
    read.read_to_end(&mut buf).map_err(|e| e.to_string())?;

    match PbCohort::decode(&buf[..]) {
        Ok(msg) => Cohort::try_from(msg),
        Err(err) => Err(err.to_string()),
    }
}