stratiphy 0.1.1

Phenotype-driven identification of disease subgroups
Documentation 
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syntax = "proto3";
/*
   Regenerate the bindings by updating the `build.rs`,
   and copying the file from `target/debug/build/stratiphy-something`
   into this folder.
*/
package stratiphy.io.workflow;

message ClusteringWorkflowResult {
  repeated double affinity_matrix = 1;
  message ClusterLabels {
    uint32 k = 1;
    repeated uint32 labels = 2;
  }
  repeated ClusterLabels cluster_labels = 2;
  repeated uint32 sort_order = 3;
  optional GapValues gap_values = 4;
  optional SplitCheck split_check = 5;
  message TermAssociations {
    uint32 k = 1;
    repeated TermAssociation associations = 2;
  }
  repeated TermAssociations term_associations = 6;
  ClusteringWorkflowMetadata metadata = 7;
}

message GapValues {
  message LogWkRand {
    uint32 k = 1;
    repeated double values = 2;
  }
  map<uint32, double> log_wk_data = 1;
  repeated LogWkRand log_wk_rand = 2;
}

message SplitCheck {
  bool should_split = 1;
  double split_proba = 2;
}

message TermAssociation {
  string term_id = 1;
  map<uint32, uint32> counts = 2;
  double pval = 3;
  optional double corrected_pval = 4;
}

message ClusteringWorkflowMetadata {
  // Semantic versioning identifier, e.g. `0.3.0`.
  string stratiphy_version = 1;
  // HPO release identifier, e.g. `v2026-02-16`.
  string hpo_version = 2;
}