sqry-core 6.0.22

Core library for sqry - semantic code search engine
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
//! Snapshot save/load implementation for the unified graph.
//!
//! This module provides functions to save and load graph snapshots
//! to/from disk using postcard serialization with length-prefixed framing.

use std::fs::File;
use std::io::{BufReader, BufWriter, Cursor, Read, Write};
use std::path::Path;

use serde::{Deserialize, Serialize};

use std::collections::HashMap;

use super::format::{GraphHeader, MAGIC_BYTES, VERSION};
use super::manifest::ConfigProvenance;
use crate::graph::unified::BidirectionalEdgeStore;
use crate::graph::unified::concurrent::CodeGraph;
use crate::graph::unified::resolution::is_canonical_graph_qualified_name;
use crate::graph::unified::storage::{
    AuxiliaryIndices, FileRegistry, NodeArena, NodeMetadataStore, StringInterner,
};
use crate::plugin::PluginManager;

/// Maximum snapshot data size (2 GB).
///
/// This limit is consistent with the full-buffer deserialization architecture
/// where both header and data buffers must fit in process memory simultaneously.
/// The largest known sqry snapshot is ~167 MB, well within this bound.
///
/// If snapshots grow beyond 2 GB, a streaming deserialization approach can replace
/// the buffer-based approach without a wire format change.
const MAX_SNAPSHOT_BYTES: u64 = 2 * 1024 * 1024 * 1024;

/// Maximum header size (1 MB).
const MAX_HEADER_BYTES: usize = 1_048_576;

/// Maximum reasonable node count (prevents allocation overflow on corrupt data)
const MAX_REASONABLE_NODES: usize = 100_000_000; // 100M nodes

/// Maximum reasonable edge count (prevents allocation overflow on corrupt data)
const MAX_REASONABLE_EDGES: usize = 1_000_000_000; // 1B edges

/// Maximum reasonable string count (prevents allocation overflow on corrupt data)
const MAX_REASONABLE_STRINGS: usize = 50_000_000; // 50M strings

/// Maximum reasonable file count (prevents allocation overflow on corrupt data)
const MAX_REASONABLE_FILES: usize = 1_000_000; // 1M files

/// Error type for persistence operations.
#[derive(Debug)]
pub enum PersistenceError {
    /// I/O error during read/write
    Io(std::io::Error),
    /// Serialization/deserialization error
    Serialization(String),
    /// Invalid magic bytes (not a sqry graph file)
    InvalidMagic {
        /// Expected magic bytes
        expected: Vec<u8>,
        /// Actual magic bytes found
        found: Vec<u8>,
    },
    /// Incompatible version
    IncompatibleVersion {
        /// Expected version number
        expected: u32,
        /// Actual version number found
        found: u32,
    },
    /// Plugin version mismatch (index built with different plugin versions)
    PluginVersionMismatch {
        /// Plugin ID with version mismatch
        plugin_id: String,
        /// Expected version (current)
        expected: String,
        /// Actual version found in index
        found: String,
    },
    /// Graph validation failed
    ValidationFailed(String),
}

impl std::fmt::Display for PersistenceError {
    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
        match self {
            Self::Io(e) => write!(f, "I/O error: {e}"),
            Self::Serialization(e) => write!(f, "Serialization error: {e}"),
            Self::InvalidMagic { expected, found } => {
                write!(
                    f,
                    "Invalid magic bytes: expected {expected:?}, found {found:?}. \
                     Index was created with an older version. Run `sqry index` to rebuild."
                )
            }
            Self::IncompatibleVersion { expected, found } => {
                write!(
                    f,
                    "Incompatible format version: expected {expected}, found {found}. \
                     Index was created with an older version. Run `sqry index` to rebuild."
                )
            }
            Self::PluginVersionMismatch {
                plugin_id,
                expected,
                found,
            } => {
                write!(
                    f,
                    "Plugin version mismatch for {plugin_id}: expected {expected}, found {found} (index needs rebuild)"
                )
            }
            Self::ValidationFailed(msg) => write!(f, "Validation failed: {msg}"),
        }
    }
}

impl std::error::Error for PersistenceError {}

impl From<std::io::Error> for PersistenceError {
    fn from(e: std::io::Error) -> Self {
        Self::Io(e)
    }
}

impl From<postcard::Error> for PersistenceError {
    fn from(e: postcard::Error) -> Self {
        Self::Serialization(e.to_string())
    }
}

/// Serializable snapshot of the graph state.
///
/// This is the complete graph state that gets persisted to disk.
#[derive(Debug, Serialize, Deserialize)]
struct GraphSnapshotData {
    /// Node storage
    nodes: NodeArena,
    /// Edge storage (forward + reverse)
    edges: BidirectionalEdgeStore,
    /// String interner
    strings: StringInterner,
    /// File registry
    files: FileRegistry,
    /// Auxiliary indices
    indices: AuxiliaryIndices,
    /// Sparse macro boundary metadata (keyed by full NodeId)
    macro_metadata: NodeMetadataStore,
}

/// Validate header counts to prevent allocation overflow on corrupted data.
///
/// This function checks that header counts are within reasonable bounds
/// to prevent memory allocation panics when postcard tries to deserialize
/// corrupted data with huge length fields.
fn validate_header_sanity(header: &GraphHeader) -> Result<(), PersistenceError> {
    if header.node_count > MAX_REASONABLE_NODES {
        return Err(PersistenceError::ValidationFailed(format!(
            "Unreasonable node_count: {} exceeds maximum of {}. \
             This likely indicates a corrupted snapshot file.",
            header.node_count, MAX_REASONABLE_NODES
        )));
    }
    if header.edge_count > MAX_REASONABLE_EDGES {
        return Err(PersistenceError::ValidationFailed(format!(
            "Unreasonable edge_count: {} exceeds maximum of {}. \
             This likely indicates a corrupted snapshot file.",
            header.edge_count, MAX_REASONABLE_EDGES
        )));
    }
    if header.string_count > MAX_REASONABLE_STRINGS {
        return Err(PersistenceError::ValidationFailed(format!(
            "Unreasonable string_count: {} exceeds maximum of {}. \
             This likely indicates a corrupted snapshot file.",
            header.string_count, MAX_REASONABLE_STRINGS
        )));
    }
    if header.file_count > MAX_REASONABLE_FILES {
        return Err(PersistenceError::ValidationFailed(format!(
            "Unreasonable file_count: {} exceeds maximum of {}. \
             This likely indicates a corrupted snapshot file.",
            header.file_count, MAX_REASONABLE_FILES
        )));
    }
    Ok(())
}

fn validate_loaded_snapshot(
    header: &GraphHeader,
    snapshot_data: &GraphSnapshotData,
) -> Result<(), PersistenceError> {
    let forward_stats = snapshot_data.edges.stats().forward;
    let total_edges = forward_stats.csr_edge_count + forward_stats.delta_edge_count;

    if header.node_count != snapshot_data.nodes.len() {
        return Err(PersistenceError::ValidationFailed(format!(
            "node_count mismatch: header={}, data={}",
            header.node_count,
            snapshot_data.nodes.len()
        )));
    }
    if header.edge_count != total_edges {
        return Err(PersistenceError::ValidationFailed(format!(
            "edge_count mismatch: header={}, data={}",
            header.edge_count, total_edges
        )));
    }
    if header.string_count != snapshot_data.strings.len() {
        return Err(PersistenceError::ValidationFailed(format!(
            "string_count mismatch: header={}, data={}",
            header.string_count,
            snapshot_data.strings.len()
        )));
    }
    if header.file_count != snapshot_data.files.len() {
        return Err(PersistenceError::ValidationFailed(format!(
            "file_count mismatch: header={}, data={}",
            header.file_count,
            snapshot_data.files.len()
        )));
    }

    validate_snapshot_semantics(snapshot_data)?;

    Ok(())
}

fn validate_snapshot_semantics(snapshot_data: &GraphSnapshotData) -> Result<(), PersistenceError> {
    for (node_id, entry) in snapshot_data.nodes.iter() {
        let file_path = snapshot_data.files.resolve(entry.file).ok_or_else(|| {
            PersistenceError::ValidationFailed(format!(
                "resolver-eligible node {node_id:?} has unresolved file id {:?}; run `sqry index` to rebuild",
                entry.file
            ))
        })?;

        let _name = snapshot_data.strings.resolve(entry.name).ok_or_else(|| {
            PersistenceError::ValidationFailed(format!(
                "resolver-eligible node {node_id:?} has unresolved name string id {:?}; run `sqry index` to rebuild",
                entry.name
            ))
        })?;

        let Some(qualified_name_id) = entry.qualified_name else {
            continue;
        };

        let qualified_name =
            snapshot_data
                .strings
                .resolve(qualified_name_id)
                .ok_or_else(|| {
                    PersistenceError::ValidationFailed(format!(
                        "resolver-eligible node {node_id:?} has unresolved qualified-name string id {qualified_name_id:?}; run `sqry index` to rebuild"
                    ))
                })?;

        let language = snapshot_data
            .files
            .language_for_file(entry.file)
            .ok_or_else(|| {
                PersistenceError::ValidationFailed(format!(
                    "resolver-eligible node {node_id:?} in '{}' is missing file language metadata; run `sqry index` to rebuild",
                    file_path.display()
                ))
            })?;

        if !is_canonical_graph_qualified_name(language, qualified_name.as_ref()) {
            return Err(PersistenceError::ValidationFailed(format!(
                "resolver-eligible node {node_id:?} in '{}' stores non-canonical qualified name '{}'; run `sqry index` to rebuild",
                file_path.display(),
                qualified_name
            )));
        }
    }

    Ok(())
}

/// Read a little-endian u32 from a reader.
fn read_u32_le(reader: &mut impl Read) -> Result<u32, std::io::Error> {
    let mut buf = [0u8; 4];
    reader.read_exact(&mut buf)?;
    Ok(u32::from_le_bytes(buf))
}

/// Read a little-endian u64 from a reader.
fn read_u64_le(reader: &mut impl Read) -> Result<u64, std::io::Error> {
    let mut buf = [0u8; 8];
    reader.read_exact(&mut buf)?;
    Ok(u64::from_le_bytes(buf))
}

/// Saves a graph to the specified path.
///
/// The graph is serialized using postcard with length-prefixed framing:
/// 1. Magic bytes (`SQRY_GRAPH_V5`)
/// 2. Header length (LE u32)
/// 3. Header (postcard-encoded `GraphHeader`)
/// 4. Data length (LE u64)
/// 5. Snapshot data (postcard-encoded `GraphSnapshotData`)
///
/// # Errors
///
/// Returns an error if the file cannot be created or serialization fails.
pub fn save_to_path(graph: &CodeGraph, path: impl AsRef<Path>) -> Result<(), PersistenceError> {
    let path = path.as_ref();
    let file = File::create(path)?;
    let mut writer = BufWriter::new(file);

    // Get a snapshot of the graph
    let snapshot = graph.snapshot();

    // Extract components from snapshot
    let nodes = snapshot.nodes().clone();
    let edges = snapshot.edges().clone();
    let strings = snapshot.strings().clone();
    let files = snapshot.files().clone();
    let indices = snapshot.indices().clone();
    let macro_metadata = snapshot.macro_metadata().clone();

    let snapshot_data = GraphSnapshotData {
        nodes,
        edges,
        strings,
        files,
        indices,
        macro_metadata,
    };

    validate_snapshot_semantics(&snapshot_data)?;

    // Invariant: the interner's lookup must be consistent before serialization.
    // A stale lookup would serialize correctly (lookup_stale is #[serde(skip)]),
    // but deserialization would silently produce an interner where lookup and
    // slots are out of sync. Assert this invariant at the persistence boundary.
    debug_assert!(
        !snapshot_data.strings.is_lookup_stale(),
        "Cannot serialize StringInterner with stale lookup — \
         call build_dedup_table() before saving"
    );

    // Create header
    let forward_stats = snapshot_data.edges.stats().forward;
    let total_edges = forward_stats.csr_edge_count + forward_stats.delta_edge_count;
    let header = GraphHeader::new(
        snapshot_data.nodes.len(),
        total_edges,
        snapshot_data.strings.len(),
        snapshot_data.files.len(),
    );

    // Serialize header and data to buffers
    let header_bytes = postcard::to_allocvec(&header)?;
    let data_bytes = postcard::to_allocvec(&snapshot_data)?;

    // Validate sizes match load-time limits (symmetry: reject on save what load would reject)
    if header_bytes.len() > MAX_HEADER_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "header too large to save".to_string(),
        ));
    }
    if data_bytes.len() as u64 > MAX_SNAPSHOT_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "data section too large to save".to_string(),
        ));
    }

    // Write framed format
    writer.write_all(MAGIC_BYTES)?;
    writer.write_all(
        &u32::try_from(header_bytes.len())
            .map_err(|_| {
                PersistenceError::ValidationFailed(
                    "header too large for u32 length prefix".to_string(),
                )
            })?
            .to_le_bytes(),
    )?;
    writer.write_all(&header_bytes)?;
    writer.write_all(&(data_bytes.len() as u64).to_le_bytes())?;
    writer.write_all(&data_bytes)?;

    writer.flush()?;
    Ok(())
}

/// Saves a graph to the specified path with config provenance.
///
/// This is the recommended save method when building graphs, as it records
/// the configuration used to build the graph for reproducibility tracking.
///
/// # Errors
///
/// Returns an error if the file cannot be created or serialization fails.
pub fn save_to_path_with_provenance(
    graph: &CodeGraph,
    path: impl AsRef<Path>,
    provenance: ConfigProvenance,
    plugins: &PluginManager,
) -> Result<(), PersistenceError> {
    let path = path.as_ref();
    let file = File::create(path)?;
    let mut writer = BufWriter::new(file);

    // Get a snapshot of the graph
    let snapshot = graph.snapshot();

    // Extract components from snapshot
    let nodes = snapshot.nodes().clone();
    let edges = snapshot.edges().clone();
    let strings = snapshot.strings().clone();
    let files = snapshot.files().clone();
    let indices = snapshot.indices().clone();
    let macro_metadata = snapshot.macro_metadata().clone();

    // Collect plugin versions
    let plugin_versions: HashMap<String, String> = plugins
        .plugins()
        .iter()
        .map(|p| {
            let meta = p.metadata();
            (meta.id.to_string(), meta.version.to_string())
        })
        .collect();

    let snapshot_data = GraphSnapshotData {
        nodes,
        edges,
        strings,
        files,
        indices,
        macro_metadata,
    };

    validate_snapshot_semantics(&snapshot_data)?;

    // Invariant: the interner's lookup must be consistent before serialization.
    debug_assert!(
        !snapshot_data.strings.is_lookup_stale(),
        "Cannot serialize StringInterner with stale lookup — \
         call build_dedup_table() before saving"
    );

    // Create header with provenance and plugin versions
    let forward_stats = snapshot_data.edges.stats().forward;
    let total_edges = forward_stats.csr_edge_count + forward_stats.delta_edge_count;
    let header = GraphHeader::with_provenance_and_plugins(
        snapshot_data.nodes.len(),
        total_edges,
        snapshot_data.strings.len(),
        snapshot_data.files.len(),
        provenance,
        plugin_versions,
    );

    // Serialize header and data to buffers
    let header_bytes = postcard::to_allocvec(&header)?;
    let data_bytes = postcard::to_allocvec(&snapshot_data)?;

    // Validate sizes match load-time limits (symmetry: reject on save what load would reject)
    if header_bytes.len() > MAX_HEADER_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "header too large to save".to_string(),
        ));
    }
    if data_bytes.len() as u64 > MAX_SNAPSHOT_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "data section too large to save".to_string(),
        ));
    }

    // Write framed format
    writer.write_all(MAGIC_BYTES)?;
    writer.write_all(
        &u32::try_from(header_bytes.len())
            .map_err(|_| {
                PersistenceError::ValidationFailed(
                    "header too large for u32 length prefix".to_string(),
                )
            })?
            .to_le_bytes(),
    )?;
    writer.write_all(&header_bytes)?;
    writer.write_all(&(data_bytes.len() as u64).to_le_bytes())?;
    writer.write_all(&data_bytes)?;

    writer.flush()?;
    Ok(())
}

/// Validates that plugin versions in the graph match current plugin versions.
fn validate_plugin_versions(
    header: &GraphHeader,
    plugins: &PluginManager,
) -> Result<(), PersistenceError> {
    // Collect current plugin versions
    let current_versions: HashMap<String, String> = plugins
        .plugins()
        .iter()
        .map(|p| {
            let meta = p.metadata();
            (meta.id.to_string(), meta.version.to_string())
        })
        .collect();

    // Check each plugin that was used to build the index
    for (plugin_id, stored_version) in header.plugin_versions() {
        match current_versions.get(plugin_id) {
            Some(current_version) if current_version != stored_version => {
                return Err(PersistenceError::PluginVersionMismatch {
                    plugin_id: plugin_id.clone(),
                    expected: current_version.clone(),
                    found: stored_version.clone(),
                });
            }
            None => {
                // Plugin was used to build index but is no longer available
                return Err(PersistenceError::PluginVersionMismatch {
                    plugin_id: plugin_id.clone(),
                    expected: "not installed".to_string(),
                    found: stored_version.clone(),
                });
            }
            Some(_) => {
                // Version matches, continue
            }
        }
    }

    Ok(())
}

/// Verify snapshot bytes against the expected SHA256 hash from the manifest.
///
/// If `expected_sha256` is empty (pre-hash index format), verification is
/// skipped and `Ok(())` is returned.
///
/// # Errors
///
/// Returns an error if the computed SHA256 does not match `expected_sha256`.
pub fn verify_snapshot_bytes(data: &[u8], expected_sha256: &str) -> anyhow::Result<()> {
    if expected_sha256.is_empty() {
        return Ok(());
    }

    use sha2::{Digest, Sha256};
    let actual_hash = format!("{:x}", Sha256::digest(data));
    if actual_hash != expected_sha256 {
        anyhow::bail!(
            "Snapshot integrity check failed: expected SHA256 {}, got {}. \
             The index may be corrupt or tampered with. Run `sqry index` to rebuild.",
            expected_sha256,
            actual_hash,
        );
    }
    Ok(())
}

/// Loads a graph from in-memory bytes.
///
/// Same validation as [`load_from_path`] but operates on a byte slice,
/// enabling single-read integrity verification (hash once, deserialize
/// from the same bytes — no TOCTOU window).
///
/// # Errors
///
/// Returns an error if the bytes are invalid, corrupt, or incompatible.
#[allow(clippy::cast_possible_truncation)] // data_len validated < MAX_SNAPSHOT_BYTES (2 GB)
pub fn load_from_bytes(
    bytes: &[u8],
    plugins: Option<&PluginManager>,
) -> Result<CodeGraph, PersistenceError> {
    let total_len = bytes.len() as u64;
    let mut reader = Cursor::new(bytes);
    let mut bytes_consumed: u64 = 0;

    // Read and validate magic bytes
    let mut magic = [0u8; 13];
    reader.read_exact(&mut magic)?;
    bytes_consumed += 13;
    if &magic != MAGIC_BYTES {
        return Err(PersistenceError::InvalidMagic {
            expected: MAGIC_BYTES.to_vec(),
            found: magic.to_vec(),
        });
    }

    // Read header length and validate before allocation
    let header_len = read_u32_le(&mut reader)? as usize;
    bytes_consumed += 4;
    if header_len > MAX_HEADER_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "header too large".to_string(),
        ));
    }
    let remaining = total_len.saturating_sub(bytes_consumed);
    if (header_len as u64) > remaining {
        return Err(PersistenceError::ValidationFailed(
            "header length exceeds remaining file bytes".to_string(),
        ));
    }

    // Read and deserialize header
    let mut header_buf = vec![0u8; header_len];
    reader.read_exact(&mut header_buf)?;
    bytes_consumed += header_len as u64;
    let header: GraphHeader = postcard::from_bytes(&header_buf)?;

    // Validate version
    if header.version != VERSION {
        return Err(PersistenceError::IncompatibleVersion {
            expected: VERSION,
            found: header.version,
        });
    }

    // Validate plugin versions (requires rebuild if mismatch) - skip if no plugin manager
    if let Some(plugin_manager) = plugins {
        validate_plugin_versions(&header, plugin_manager)?;
    }

    // Validate header counts before attempting data deserialization
    validate_header_sanity(&header)?;

    // Read data length and validate before allocation
    let data_len = read_u64_le(&mut reader)?;
    bytes_consumed += 8;
    if data_len > MAX_SNAPSHOT_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "data section too large".to_string(),
        ));
    }
    let remaining = total_len.saturating_sub(bytes_consumed);
    if data_len > remaining {
        return Err(PersistenceError::ValidationFailed(
            "data length exceeds remaining file bytes".to_string(),
        ));
    }

    // Read and deserialize data
    let mut data_buf = vec![0u8; data_len as usize];
    reader.read_exact(&mut data_buf)?;
    let snapshot_data: GraphSnapshotData = postcard::from_bytes(&data_buf)?;

    // Reject trailing bytes
    let mut trailing = [0u8; 1];
    if reader.read(&mut trailing)? > 0 {
        return Err(PersistenceError::ValidationFailed(
            "unexpected trailing bytes after data section".to_string(),
        ));
    }

    validate_loaded_snapshot(&header, &snapshot_data)?;

    Ok(CodeGraph::from_components(
        snapshot_data.nodes,
        snapshot_data.edges,
        snapshot_data.strings,
        snapshot_data.files,
        snapshot_data.indices,
        snapshot_data.macro_metadata,
    ))
}

/// Loads a graph from the specified path.
///
/// Reads the V4 framed format with length-prefixed sections and pre-allocation
/// validation. Rejects V3 and earlier snapshots with a clear error message.
///
/// # Errors
///
/// Returns an error if the file is invalid, corrupt, or incompatible.
#[allow(clippy::cast_possible_truncation)] // data_len validated < MAX_SNAPSHOT_BYTES (2 GB)
pub fn load_from_path(
    path: impl AsRef<Path>,
    plugins: Option<&PluginManager>,
) -> Result<CodeGraph, PersistenceError> {
    let path = path.as_ref();
    let file = File::open(path)?;
    let file_len = file.metadata()?.len();
    let mut reader = BufReader::new(file);
    let mut bytes_consumed: u64 = 0;

    // Read and validate magic bytes
    let mut magic = [0u8; 13];
    reader.read_exact(&mut magic)?;
    bytes_consumed += 13;
    if &magic != MAGIC_BYTES {
        return Err(PersistenceError::InvalidMagic {
            expected: MAGIC_BYTES.to_vec(),
            found: magic.to_vec(),
        });
    }

    // Read header length and validate before allocation
    let header_len = read_u32_le(&mut reader)? as usize;
    bytes_consumed += 4;
    if header_len > MAX_HEADER_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "header too large".to_string(),
        ));
    }
    let remaining = file_len.saturating_sub(bytes_consumed);
    if (header_len as u64) > remaining {
        return Err(PersistenceError::ValidationFailed(
            "header length exceeds remaining file bytes".to_string(),
        ));
    }

    // Read and deserialize header
    let mut header_buf = vec![0u8; header_len];
    reader.read_exact(&mut header_buf)?;
    bytes_consumed += header_len as u64;
    let header: GraphHeader = postcard::from_bytes(&header_buf)?;

    // Validate version
    if header.version != VERSION {
        return Err(PersistenceError::IncompatibleVersion {
            expected: VERSION,
            found: header.version,
        });
    }

    // Validate plugin versions (requires rebuild if mismatch) - skip if no plugin manager
    if let Some(plugin_manager) = plugins {
        validate_plugin_versions(&header, plugin_manager)?;
    }

    // Validate header counts before attempting data deserialization
    validate_header_sanity(&header)?;

    // Read data length and validate before allocation
    let data_len = read_u64_le(&mut reader)?;
    bytes_consumed += 8;
    if data_len > MAX_SNAPSHOT_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "data section too large".to_string(),
        ));
    }
    let remaining = file_len.saturating_sub(bytes_consumed);
    if data_len > remaining {
        return Err(PersistenceError::ValidationFailed(
            "data length exceeds remaining file bytes".to_string(),
        ));
    }

    // Read and deserialize data
    let mut data_buf = vec![0u8; data_len as usize];
    reader.read_exact(&mut data_buf)?;
    let snapshot_data: GraphSnapshotData = postcard::from_bytes(&data_buf)?;

    // Reject trailing bytes
    let mut trailing = [0u8; 1];
    if reader.read(&mut trailing)? > 0 {
        return Err(PersistenceError::ValidationFailed(
            "unexpected trailing bytes after data section".to_string(),
        ));
    }

    validate_loaded_snapshot(&header, &snapshot_data)?;

    Ok(CodeGraph::from_components(
        snapshot_data.nodes,
        snapshot_data.edges,
        snapshot_data.strings,
        snapshot_data.files,
        snapshot_data.indices,
        snapshot_data.macro_metadata,
    ))
}

/// Validates a graph snapshot file without fully loading it.
///
/// Checks magic bytes, version, and header deserialization.
///
/// # Errors
///
/// Returns an error if validation fails.
pub fn validate_snapshot(path: impl AsRef<Path>) -> Result<bool, PersistenceError> {
    let path = path.as_ref();
    let file = File::open(path)?;
    let file_len = file.metadata()?.len();
    let mut reader = BufReader::new(file);
    let mut bytes_consumed: u64 = 0;

    // Read and validate magic bytes
    let mut magic = [0u8; 13];
    reader.read_exact(&mut magic)?;
    bytes_consumed += 13;
    if &magic != MAGIC_BYTES {
        return Err(PersistenceError::InvalidMagic {
            expected: MAGIC_BYTES.to_vec(),
            found: magic.to_vec(),
        });
    }

    // Read header length
    let header_len = read_u32_le(&mut reader)? as usize;
    bytes_consumed += 4;
    if header_len > MAX_HEADER_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "header too large".to_string(),
        ));
    }
    let remaining = file_len.saturating_sub(bytes_consumed);
    if (header_len as u64) > remaining {
        return Err(PersistenceError::ValidationFailed(
            "header length exceeds remaining file bytes".to_string(),
        ));
    }

    // Read and deserialize header
    let mut header_buf = vec![0u8; header_len];
    reader.read_exact(&mut header_buf)?;
    let header: GraphHeader = postcard::from_bytes(&header_buf)?;

    // Validate version
    if header.version != VERSION {
        return Err(PersistenceError::IncompatibleVersion {
            expected: VERSION,
            found: header.version,
        });
    }

    // Basic validation passed
    Ok(true)
}

/// Loads just the header from a graph file (fast, doesn't load graph data).
///
/// # Errors
///
/// Returns an error if the file cannot be read or is invalid.
pub fn load_header_from_path(path: impl AsRef<Path>) -> Result<GraphHeader, PersistenceError> {
    let path = path.as_ref();
    let file = File::open(path)?;
    let file_len = file.metadata()?.len();
    let mut reader = BufReader::new(file);
    let mut bytes_consumed: u64 = 0;

    // Read and validate magic bytes
    let mut magic = [0u8; 13];
    reader.read_exact(&mut magic)?;
    bytes_consumed += 13;
    if &magic != MAGIC_BYTES {
        return Err(PersistenceError::InvalidMagic {
            expected: MAGIC_BYTES.to_vec(),
            found: magic.to_vec(),
        });
    }

    // Read header length
    let header_len = read_u32_le(&mut reader)? as usize;
    bytes_consumed += 4;
    if header_len > MAX_HEADER_BYTES {
        return Err(PersistenceError::ValidationFailed(
            "header too large".to_string(),
        ));
    }
    let remaining = file_len.saturating_sub(bytes_consumed);
    if (header_len as u64) > remaining {
        return Err(PersistenceError::ValidationFailed(
            "header length exceeds remaining file bytes".to_string(),
        ));
    }

    // Read and deserialize header
    let mut header_buf = vec![0u8; header_len];
    reader.read_exact(&mut header_buf)?;
    let header: GraphHeader = postcard::from_bytes(&header_buf)?;

    // Validate version
    if header.version != VERSION {
        return Err(PersistenceError::IncompatibleVersion {
            expected: VERSION,
            found: header.version,
        });
    }

    Ok(header)
}

/// Checks if a graph's config has drifted from the current config.
///
/// # Errors
///
/// Returns an error if the graph header cannot be read or if provenance is missing.
pub fn check_config_drift(
    graph_path: impl AsRef<Path>,
    current_checksum: &str,
) -> Result<bool, PersistenceError> {
    let header = load_header_from_path(graph_path)?;

    match header.config_provenance {
        Some(provenance) => Ok(provenance.config_matches(current_checksum)),
        None => Err(PersistenceError::ValidationFailed(
            "Graph has no config provenance".to_string(),
        )),
    }
}

#[cfg(test)]
mod tests {
    use super::super::manifest::{OverrideEntry, OverrideSource};
    use super::*;
    use crate::graph::node::Language;
    use crate::graph::unified::file::FileId;
    use crate::graph::unified::node::NodeKind;
    use crate::graph::unified::storage::NodeEntry;
    use tempfile::NamedTempFile;

    // Test helper to create an empty plugin manager
    fn create_test_plugin_manager() -> PluginManager {
        PluginManager::new()
    }

    fn write_snapshot_fixture(
        path: &Path,
        snapshot_data: &GraphSnapshotData,
    ) -> Result<(), PersistenceError> {
        let forward_stats = snapshot_data.edges.stats().forward;
        let total_edges = forward_stats.csr_edge_count + forward_stats.delta_edge_count;
        let header = GraphHeader::new(
            snapshot_data.nodes.len(),
            total_edges,
            snapshot_data.strings.len(),
            snapshot_data.files.len(),
        );
        let header_bytes = postcard::to_allocvec(&header)?;
        let data_bytes = postcard::to_allocvec(snapshot_data)?;

        let mut file = File::create(path)?;
        file.write_all(MAGIC_BYTES)?;
        file.write_all(&(header_bytes.len() as u32).to_le_bytes())?;
        file.write_all(&header_bytes)?;
        file.write_all(&(data_bytes.len() as u64).to_le_bytes())?;
        file.write_all(&data_bytes)?;
        file.flush()?;
        Ok(())
    }

    fn graph_with_one_node(
        qualified_name: &str,
        language: Language,
        file_path: &Path,
    ) -> CodeGraph {
        let mut graph = CodeGraph::new();
        let file_id = graph
            .files_mut()
            .register_with_language(file_path, Some(language))
            .unwrap();
        let name_id = graph.strings_mut().intern("target").unwrap();
        let qname_id = graph.strings_mut().intern(qualified_name).unwrap();
        let entry = NodeEntry::new(NodeKind::Function, name_id, file_id)
            .with_location(1, 0, 1, 6)
            .with_qualified_name(qname_id);
        let node_id = graph.nodes_mut().alloc(entry.clone()).unwrap();
        graph.indices_mut().add(
            node_id,
            entry.kind,
            entry.name,
            entry.qualified_name,
            entry.file,
        );
        graph
    }

    #[test]
    fn test_save_load_empty_graph() {
        let graph = CodeGraph::new();
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Save
        save_to_path(&graph, path).unwrap();

        // Validate
        assert!(validate_snapshot(path).unwrap());

        // Load
        let loaded = load_from_path(path, Some(&plugins)).unwrap();
        let snapshot = loaded.snapshot();

        assert_eq!(snapshot.nodes().len(), 0);
        assert_eq!(snapshot.strings().len(), 0);
        assert_eq!(snapshot.files().len(), 0);
    }

    #[test]
    fn test_save_load_with_provenance() {
        let graph = CodeGraph::new();
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Create provenance
        let provenance = ConfigProvenance::new(
            ".sqry/graph/config/config.json",
            "abc123checksum".to_string(),
            1,
        );

        // Save with provenance
        save_to_path_with_provenance(&graph, path, provenance, &plugins).unwrap();

        // Load header and check provenance
        let header = load_header_from_path(path).unwrap();
        assert!(header.has_provenance());

        let loaded_provenance = header.provenance().unwrap();
        assert_eq!(loaded_provenance.config_checksum, "abc123checksum");
        assert_eq!(loaded_provenance.schema_version, 1);
    }

    #[test]
    fn test_config_drift_detection() {
        let graph = CodeGraph::new();
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Create provenance with known checksum
        let provenance = ConfigProvenance::new(
            ".sqry/graph/config/config.json",
            "original_checksum".to_string(),
            1,
        );

        // Save with provenance
        save_to_path_with_provenance(&graph, path, provenance, &plugins).unwrap();

        // Check drift - same checksum should match
        assert!(check_config_drift(path, "original_checksum").unwrap());

        // Check drift - different checksum should not match
        assert!(!check_config_drift(path, "different_checksum").unwrap());
    }

    #[test]
    fn test_config_drift_no_provenance() {
        let graph = CodeGraph::new();
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();

        // Save without provenance
        save_to_path(&graph, path).unwrap();

        // Check drift should fail - no provenance
        let result = check_config_drift(path, "any_checksum");
        assert!(result.is_err());
    }

    #[test]
    fn test_provenance_with_overrides() {
        let graph = CodeGraph::new();
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Create provenance with overrides
        let mut provenance =
            ConfigProvenance::new(".sqry/graph/config/config.json", "checksum".to_string(), 1);
        provenance.add_override(OverrideEntry {
            source: OverrideSource::Cli,
            key: "parallelism.max_workers".to_string(),
            value: "16".to_string(),
            original_value: Some("8".to_string()),
        });

        // Save
        save_to_path_with_provenance(&graph, path, provenance, &plugins).unwrap();

        // Load and verify overrides
        let header = load_header_from_path(path).unwrap();
        let loaded_provenance = header.provenance().unwrap();

        assert!(loaded_provenance.has_overrides());
        assert_eq!(loaded_provenance.override_count(), 1);
    }

    #[test]
    fn test_load_rejects_invalid_magic() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Write garbage magic bytes
        let mut file = File::create(path).unwrap();
        file.write_all(b"NOT_SQRY_MAGIC").unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::InvalidMagic { .. } => {}
            other => panic!("Expected InvalidMagic, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_v3_snapshot() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Write V3 magic bytes (old format)
        let mut file = File::create(path).unwrap();
        file.write_all(b"SQRY_GRAPH_V3").unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::InvalidMagic { .. } => {}
            other => panic!("Expected InvalidMagic for V3 snapshot, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_corrupted_header_counts() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Write a valid V4 file with corrupted header counts
        let corrupt_header = GraphHeader::new(
            100_000_001, // Corrupted node_count (just over the limit)
            0,
            0,
            0,
        );
        let header_bytes = postcard::to_allocvec(&corrupt_header).unwrap();

        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&(header_bytes.len() as u32).to_le_bytes())
            .unwrap();
        file.write_all(&header_bytes).unwrap();
        // Write dummy data length and no data
        file.write_all(&0u64.to_le_bytes()).unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());

        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(msg.contains("Unreasonable node_count"));
                assert!(msg.contains("corrupted"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_header_length_exceeding_file() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Write magic + header_len that exceeds remaining file bytes
        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&999_999u32.to_le_bytes()).unwrap(); // header_len way too big
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(msg.contains("header length exceeds remaining file bytes"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_data_length_exceeding_file() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Write valid magic + valid header + data_len exceeding file
        let header = GraphHeader::new(0, 0, 0, 0);
        let header_bytes = postcard::to_allocvec(&header).unwrap();

        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&(header_bytes.len() as u32).to_le_bytes())
            .unwrap();
        file.write_all(&header_bytes).unwrap();
        file.write_all(&999_999u64.to_le_bytes()).unwrap(); // data_len way too big
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(msg.contains("data length exceeds remaining file bytes"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_trailing_bytes() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Save a valid graph
        let graph = CodeGraph::new();
        save_to_path(&graph, path).unwrap();

        // Append trailing bytes
        let mut file = std::fs::OpenOptions::new().append(true).open(path).unwrap();
        file.write_all(b"junk").unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(msg.contains("trailing bytes"));
            }
            other => panic!("Expected ValidationFailed for trailing bytes, got: {other:?}"),
        }
    }

    #[test]
    fn test_save_rejects_non_canonical_qualified_name() {
        let graph = graph_with_one_node(
            "pkg.module.target",
            Language::Python,
            Path::new("/tmp/test.py"),
        );
        let temp_file = NamedTempFile::new().unwrap();

        let result = save_to_path(&graph, temp_file.path());
        assert!(result.is_err());

        match result.unwrap_err() {
            PersistenceError::ValidationFailed(message) => {
                assert!(message.contains("non-canonical qualified name"));
                assert!(message.contains("sqry index"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_non_canonical_qualified_name() {
        let graph = graph_with_one_node(
            "pkg::module::target",
            Language::Python,
            Path::new("/tmp/test.py"),
        );
        let snapshot = graph.snapshot();
        let mut snapshot_data = GraphSnapshotData {
            nodes: snapshot.nodes().clone(),
            edges: snapshot.edges().clone(),
            strings: snapshot.strings().clone(),
            files: snapshot.files().clone(),
            indices: snapshot.indices().clone(),
            macro_metadata: snapshot.macro_metadata().clone(),
        };
        let temp_file = NamedTempFile::new().unwrap();
        let plugins = create_test_plugin_manager();

        let invalid_qname_id = snapshot_data.strings.intern("pkg.module.target").unwrap();
        let (node_id, entry) = snapshot_data.nodes.iter().next().unwrap();
        let entry_kind = entry.kind;
        let entry_name = entry.name;
        let entry_file = entry.file;
        snapshot_data.nodes.get_mut(node_id).unwrap().qualified_name = Some(invalid_qname_id);
        snapshot_data.indices.clear();
        snapshot_data.indices.add(
            node_id,
            entry_kind,
            entry_name,
            Some(invalid_qname_id),
            entry_file,
        );

        write_snapshot_fixture(temp_file.path(), &snapshot_data).unwrap();

        let result = load_from_path(temp_file.path(), Some(&plugins));
        assert!(result.is_err());

        match result.unwrap_err() {
            PersistenceError::ValidationFailed(message) => {
                assert!(message.contains("non-canonical qualified name"));
                assert!(message.contains("sqry index"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_node_with_unresolved_file_id() {
        let mut graph = CodeGraph::new();
        let registered_file = graph
            .files_mut()
            .register_with_language(Path::new("/tmp/test.rs"), Some(Language::Rust))
            .unwrap();
        let name_id = graph.strings_mut().intern("target").unwrap();
        let qname_id = graph.strings_mut().intern("pkg::target").unwrap();
        let invalid_file_id = FileId::new(registered_file.index() + 100);
        let entry = NodeEntry::new(NodeKind::Function, name_id, invalid_file_id)
            .with_location(1, 0, 1, 6)
            .with_qualified_name(qname_id);
        let node_id = graph.nodes_mut().alloc(entry.clone()).unwrap();
        graph.indices_mut().add(
            node_id,
            entry.kind,
            entry.name,
            entry.qualified_name,
            entry.file,
        );

        let snapshot = graph.snapshot();
        let snapshot_data = GraphSnapshotData {
            nodes: snapshot.nodes().clone(),
            edges: snapshot.edges().clone(),
            strings: snapshot.strings().clone(),
            files: snapshot.files().clone(),
            indices: snapshot.indices().clone(),
            macro_metadata: snapshot.macro_metadata().clone(),
        };
        let temp_file = NamedTempFile::new().unwrap();
        let plugins = create_test_plugin_manager();

        write_snapshot_fixture(temp_file.path(), &snapshot_data).unwrap();

        let result = load_from_path(temp_file.path(), Some(&plugins));
        assert!(result.is_err());

        match result.unwrap_err() {
            PersistenceError::ValidationFailed(message) => {
                assert!(message.contains("unresolved file id"));
                assert!(message.contains("sqry index"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_large_edge_count() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        let corrupt_header = GraphHeader::new(
            100,
            1_000_001_000, // Edge count exceeds limit
            10,
            1,
        );
        let header_bytes = postcard::to_allocvec(&corrupt_header).unwrap();

        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&(header_bytes.len() as u32).to_le_bytes())
            .unwrap();
        file.write_all(&header_bytes).unwrap();
        file.write_all(&0u64.to_le_bytes()).unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(msg.contains("Unreasonable edge_count"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_large_string_count() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        let corrupt_header = GraphHeader::new(
            100, 1000, 50_001_000, // String count exceeds limit
            1,
        );
        let header_bytes = postcard::to_allocvec(&corrupt_header).unwrap();

        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&(header_bytes.len() as u32).to_le_bytes())
            .unwrap();
        file.write_all(&header_bytes).unwrap();
        file.write_all(&0u64.to_le_bytes()).unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(msg.contains("Unreasonable string_count"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_large_file_count() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        let corrupt_header = GraphHeader::new(
            100, 1000, 1000, 1_001_000, // File count exceeds limit
        );
        let header_bytes = postcard::to_allocvec(&corrupt_header).unwrap();

        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&(header_bytes.len() as u32).to_le_bytes())
            .unwrap();
        file.write_all(&header_bytes).unwrap();
        file.write_all(&0u64.to_le_bytes()).unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(msg.contains("Unreasonable file_count"));
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_plugin_version_tracking() {
        let graph = CodeGraph::new();
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        let provenance = ConfigProvenance::new(
            ".sqry/graph/config/config.json",
            "test_checksum".to_string(),
            1,
        );

        // Save with plugin versions
        save_to_path_with_provenance(&graph, path, provenance, &plugins).unwrap();

        // Load header and verify plugin versions are empty (no plugins registered)
        let header = load_header_from_path(path).unwrap();
        assert_eq!(header.plugin_versions().len(), 0);

        // Load should succeed with matching plugin manager
        let loaded = load_from_path(path, Some(&plugins)).unwrap();
        assert_eq!(loaded.snapshot().nodes().len(), 0);
    }

    #[test]
    fn test_load_rejects_header_exceeding_max_header_bytes() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();

        // Write magic, then a header_len that exceeds MAX_HEADER_BYTES (1 MB)
        let declared_header_len: u32 = (MAX_HEADER_BYTES as u32) + 1;
        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&declared_header_len.to_le_bytes()).unwrap();
        // Write enough padding so the file is large enough that the
        // "exceeds remaining bytes" check doesn't trigger first
        let padding = vec![0u8; declared_header_len as usize + 16];
        file.write_all(&padding).unwrap();
        file.flush().unwrap();

        let result = load_from_path(path, None);
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(
                    msg.contains("header too large"),
                    "Expected 'header too large', got: {msg}"
                );
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_load_rejects_data_exceeding_max_snapshot_bytes() {
        let temp_file = NamedTempFile::new().unwrap();
        let path = temp_file.path();
        let plugins = create_test_plugin_manager();

        // Build a valid header so we get past header validation
        let header = GraphHeader::new(0, 0, 0, 0);
        let header_bytes = postcard::to_allocvec(&header).unwrap();

        // Write the framed format with a data_len exceeding MAX_SNAPSHOT_BYTES (2 GB)
        let declared_data_len: u64 = MAX_SNAPSHOT_BYTES + 1;
        let mut file = File::create(path).unwrap();
        file.write_all(MAGIC_BYTES).unwrap();
        file.write_all(&(header_bytes.len() as u32).to_le_bytes())
            .unwrap();
        file.write_all(&header_bytes).unwrap();
        file.write_all(&declared_data_len.to_le_bytes()).unwrap();
        // We don't need actual data — the check happens before reading the data section
        file.flush().unwrap();

        let result = load_from_path(path, Some(&plugins));
        assert!(result.is_err());
        match result.unwrap_err() {
            PersistenceError::ValidationFailed(msg) => {
                assert!(
                    msg.contains("data section too large"),
                    "Expected 'data section too large', got: {msg}"
                );
            }
            other => panic!("Expected ValidationFailed, got: {other:?}"),
        }
    }

    #[test]
    fn test_verify_snapshot_bytes_correct_hash() {
        use sha2::{Digest, Sha256};
        let data = b"some graph snapshot data";
        let correct_hash = format!("{:x}", Sha256::digest(data));
        assert!(verify_snapshot_bytes(data, &correct_hash).is_ok());
    }

    #[test]
    fn test_verify_snapshot_bytes_wrong_hash() {
        let data = b"some graph snapshot data";
        let err = verify_snapshot_bytes(data, "deadbeef").unwrap_err();
        assert!(err.to_string().contains("integrity check failed"));
    }

    #[test]
    fn test_verify_snapshot_bytes_empty_hash_skips() {
        let data = b"anything";
        assert!(verify_snapshot_bytes(data, "").is_ok());
    }

    #[test]
    fn test_load_from_bytes_matches_load_from_path() {
        // Save a graph, then verify load_from_bytes produces the same result
        let plugins = crate::plugin::PluginManager::new();
        let graph = CodeGraph::new();
        let dir = tempfile::tempdir().unwrap();
        let path = dir.path().join("test.sqry");

        save_to_path(&graph, &path).unwrap();

        let path_graph = load_from_path(&path, Some(&plugins)).unwrap();
        let bytes = std::fs::read(&path).unwrap();
        let bytes_graph = load_from_bytes(&bytes, Some(&plugins)).unwrap();

        // Both should produce graphs with the same node/edge counts
        assert_eq!(path_graph.node_count(), bytes_graph.node_count());
        assert_eq!(path_graph.edge_count(), bytes_graph.edge_count());
    }
}