space_trav_lr_rust 1.3.0

Spatial gene regulatory network inference and in-silico perturbation (Rust port of SpaceTravLR)
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<div>
  <header>
    <div class="header-top">
      <div class="logo-block">
        <h1>Space<span>TravLR</span></h1>
        <div class="subtitle">Spatially Perturbing Transcription Factors, Ligands &amp; Receptors · Run Report</div>
        <div class="status-badge">Completed Successfully</div>
      </div>
      <div class="run-meta">
        <div><strong>Run ID</strong>&nbsp;&nbsp;kidney_spatial_demo</div>
        <div><strong>AnnData</strong>&nbsp;&nbsp;/data/kidney_visium/processed.h5ad</div>
        <div><strong>Started</strong>&nbsp;&nbsp;2026-03-25 14:22:01 UTC</div>
        <div><strong>Finished</strong>&nbsp;&nbsp;2026-03-26 09:15:33 UTC</div>
      </div>
    </div>
  </header>

  <div class="path-bar">
    <div class="path-bar-item">
      <span class="pb-label">AnnData</span>
      <span class="pb-path">/data/kidney_visium/processed.h5ad</span>
    </div>
    <div class="path-bar-item">
      <span class="pb-label">Beta outputs</span>
      <span class="pb-path"><span class="pb-dir">/outputs/kidney_run/</span>*_betadata.feather</span>
    </div>
    <div class="path-bar-item">
      <span class="pb-label">Report</span>
      <span class="pb-path"><span class="pb-dir">/outputs/kidney_run/</span>spacetravlr_run_summary.html</span>
    </div>
  </div>

  <div class="container">
    <div>
      <div class="section-label">Overview</div>
      <div class="stat-grid">
        <div class="stat-cell">
          <div class="label">Cells (obs)</div>
          <div class="value">12,847</div>
          <div class="sub">in report AnnData</div>
        </div>
        <div class="stat-cell good">
          <div class="label">Genes (vars)</div>
          <div class="value">18,632</div>
          <div class="sub">expression matrix</div>
        </div>
        <div class="stat-cell sky">
          <div class="label">Betadata files</div>
          <div class="value">412</div>
          <div class="sub">matching *_betadata.feather</div>
        </div>
      </div>
    </div>

    <p class="note-panel">
      Spatial / UMAP figures are not generated here; use scanpy or your notebook on the same <code>.h5ad</code> if needed.
      Clusters in the table use <strong>leiden</strong>; spatial key detected: <strong>spatial</strong>.
    </p>

    <div class="two-col">
      <div>
        <div class="section-label">AnnData</div>
        <div class="card">
          <div class="card-title">⬡ summary</div>
          <table class="kv-table">
            <tr><td class="k">Shape (obs × vars)</td><td class="v">12,847 × 18,632</td></tr>
            <tr><td class="k">Cluster key (obs)</td><td class="v">leiden</td></tr>
            <tr><td class="k">Unique clusters</td><td class="v">24</td></tr>
            <tr><td class="k">Spatial obsm key</td><td class="v">spatial</td></tr>
            <tr><td class="k">UMAP present</td><td class="v">yes (obsm['X_umap'])</td></tr>
          </table>
        </div>
      </div>
      <div>
        <div class="section-label">Training (config / manifest)</div>
        <div class="card">
          <div class="card-title">⚙ run</div>
          <table class="kv-table">
            <tr><td class="k">training.mode / manifest</td><td class="v">hybrid</td></tr>
            <tr><td class="k">training.epochs</td><td class="v">80</td></tr>
            <tr><td class="k">execution.n_parallel</td><td class="v">8</td></tr>
            <tr><td class="k">data.layer</td><td class="v">counts</td></tr>
            <tr><td class="k">data.cluster_annot</td><td class="v">leiden</td></tr>
            <tr><td class="k">spatial coords</td><td class="v">adata.obsm['spatial']</td></tr>
            <tr><td class="k">betadata files (*_betadata.feather)</td><td class="v">412</td></tr>
          </table>
        </div>
      </div>
    </div>
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  <footer>
    <span>SpaceTravLR · Rust training report</span>
    <span>Generated 2026-03-26 12:00:00 UTC · kidney_spatial_demo</span>
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