solvr 0.2.0-beta.2

Advanced computing library for real-world problem solving - optimization, differential equations, interpolation, statistics, and more
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
//! Wishart distribution.

use super::special;
use crate::stats::distribution::Distribution;
use crate::stats::error::{StatsError, StatsResult};

/// Wishart distribution.
///
/// The Wishart distribution is a matrix-variate distribution over p×p
/// positive-definite matrices. It is parameterized by degrees of freedom ν
/// and a p×p positive-definite scale matrix V.
///
/// PDF: f(X) = |X|^((ν-p-1)/2) exp(-tr(V⁻¹X)/2) / (2^(νp/2) |V|^(ν/2) Γₚ(ν/2))
///
/// where Γₚ is the multivariate gamma function.
#[derive(Debug, Clone)]
pub struct Wishart {
    /// Degrees of freedom (ν)
    df: f64,
    /// Scale matrix (p×p, flattened row-major)
    scale: Vec<f64>,
    /// Dimension
    p: usize,
    /// Log-determinant of scale matrix
    log_det_scale: f64,
    /// Log normalizing constant
    log_norm: f64,
}

impl Wishart {
    /// Create a new Wishart distribution.
    ///
    /// # Arguments
    ///
    /// * `df` - Degrees of freedom (must be >= p)
    /// * `scale` - p×p positive-definite scale matrix (flattened row-major)
    /// * `p` - Matrix dimension
    pub fn new(df: f64, scale: Vec<f64>, p: usize) -> StatsResult<Self> {
        if p == 0 {
            return Err(StatsError::InvalidParameter {
                name: "p".to_string(),
                value: 0.0,
                reason: "dimension must be positive".to_string(),
            });
        }
        if scale.len() != p * p {
            return Err(StatsError::InvalidParameter {
                name: "scale".to_string(),
                value: scale.len() as f64,
                reason: format!("scale matrix must have p*p = {} elements", p * p),
            });
        }
        if df < p as f64 {
            return Err(StatsError::InvalidParameter {
                name: "df".to_string(),
                value: df,
                reason: format!("degrees of freedom must be >= p = {}", p),
            });
        }

        let log_det_scale = log_det(&scale, p);
        if log_det_scale.is_nan() || log_det_scale.is_infinite() {
            return Err(StatsError::InvalidParameter {
                name: "scale".to_string(),
                value: log_det_scale,
                reason: "scale matrix must be positive definite".to_string(),
            });
        }

        // Log normalizing constant:
        // log(2^(νp/2)) + (ν/2)*log|V| + log(Γₚ(ν/2))
        let half_df = df / 2.0;
        let pf = p as f64;
        let log_norm = half_df * pf * std::f64::consts::LN_2
            + half_df * log_det_scale
            + log_multivariate_gamma(half_df, p);

        Ok(Self {
            df,
            scale,
            p,
            log_det_scale,
            log_norm,
        })
    }

    /// Get degrees of freedom.
    pub fn df(&self) -> f64 {
        self.df
    }

    /// Get the scale matrix (flattened).
    pub fn scale(&self) -> &[f64] {
        &self.scale
    }

    /// Get the dimension.
    pub fn p(&self) -> usize {
        self.p
    }

    /// Mean matrix: E`[X]` = ν * V
    pub fn mean_matrix(&self) -> Vec<f64> {
        self.scale.iter().map(|&v| self.df * v).collect()
    }

    /// Mode matrix: (ν - p - 1) * V for ν >= p + 1
    pub fn mode_matrix(&self) -> Option<Vec<f64>> {
        let pf = self.p as f64;
        if self.df < pf + 1.0 {
            return None;
        }
        let factor = self.df - pf - 1.0;
        Some(self.scale.iter().map(|&v| factor * v).collect())
    }

    /// Log-PDF of a p×p positive-definite matrix X (flattened row-major).
    pub fn log_pdf(&self, x: &[f64]) -> f64 {
        assert_eq!(x.len(), self.p * self.p, "x must be p×p matrix");

        let log_det_x = log_det(x, self.p);
        if log_det_x.is_nan() || log_det_x.is_infinite() {
            return f64::NEG_INFINITY;
        }

        let pf = self.p as f64;

        // (ν - p - 1)/2 * log|X|
        let term1 = (self.df - pf - 1.0) / 2.0 * log_det_x;

        // -tr(V⁻¹ X) / 2
        let scale_inv = matrix_inverse(&self.scale, self.p);
        let trace = matrix_trace_product(&scale_inv, x, self.p);
        let term2 = -trace / 2.0;

        term1 + term2 - self.log_norm
    }

    /// PDF of a p×p positive-definite matrix X.
    pub fn pdf(&self, x: &[f64]) -> f64 {
        self.log_pdf(x).exp()
    }
}

impl Distribution for Wishart {
    fn mean(&self) -> f64 {
        // Trace of mean matrix / p = ν * tr(V) / p
        let trace: f64 = (0..self.p).map(|i| self.scale[i * self.p + i]).sum();
        self.df * trace / self.p as f64
    }

    fn var(&self) -> f64 {
        // Var(X_ii) = 2ν * V_ii²
        let v_00 = self.scale[0];
        2.0 * self.df * v_00 * v_00
    }

    fn entropy(&self) -> f64 {
        let pf = self.p as f64;
        let half_df = self.df / 2.0;

        self.log_norm + (pf + 1.0 - self.df) / 2.0 * self.log_det_scale + half_df * pf
            - (self.df - pf - 1.0) / 2.0
                * (0..self.p)
                    .map(|i| special::digamma((self.df - i as f64) / 2.0))
                    .sum::<f64>()
    }

    fn median(&self) -> f64 {
        // No closed form; approximate as mean
        self.mean()
    }

    fn mode(&self) -> f64 {
        let pf = self.p as f64;
        if self.df >= pf + 1.0 {
            let trace: f64 = (0..self.p).map(|i| self.scale[i * self.p + i]).sum();
            (self.df - pf - 1.0) * trace / pf
        } else {
            0.0
        }
    }

    fn skewness(&self) -> f64 {
        // Approximate: skewness of diagonal element
        (8.0 / self.df).sqrt()
    }

    fn kurtosis(&self) -> f64 {
        // Excess kurtosis of diagonal element: 12/ν
        12.0 / self.df
    }
}

// --- Matrix helpers ---

/// Log-determinant via LU decomposition with partial pivoting.
fn log_det(m: &[f64], n: usize) -> f64 {
    let mut a = m.to_vec();
    let mut sign = 1.0_f64;

    for k in 0..n {
        // Find pivot
        let mut max_val = a[k * n + k].abs();
        let mut max_row = k;
        for i in (k + 1)..n {
            let v = a[i * n + k].abs();
            if v > max_val {
                max_val = v;
                max_row = i;
            }
        }

        if max_val < 1e-15 {
            return f64::NEG_INFINITY; // Singular
        }

        if max_row != k {
            for j in 0..n {
                a.swap(k * n + j, max_row * n + j);
            }
            sign = -sign;
        }

        let pivot = a[k * n + k];
        for i in (k + 1)..n {
            let factor = a[i * n + k] / pivot;
            for j in (k + 1)..n {
                a[i * n + j] -= factor * a[k * n + j];
            }
        }
    }

    let mut log_det = if sign > 0.0 { 0.0 } else { return f64::NAN };
    for i in 0..n {
        let d = a[i * n + i];
        if d <= 0.0 {
            return f64::NEG_INFINITY;
        }
        log_det += d.ln();
    }
    log_det
}

/// Matrix inverse via Gauss-Jordan elimination.
fn matrix_inverse(m: &[f64], n: usize) -> Vec<f64> {
    let mut aug = vec![0.0; n * 2 * n];

    // Build augmented matrix [A | I]
    for i in 0..n {
        for j in 0..n {
            aug[i * 2 * n + j] = m[i * n + j];
        }
        aug[i * 2 * n + n + i] = 1.0;
    }

    let w = 2 * n;
    for k in 0..n {
        // Find pivot
        let mut max_row = k;
        let mut max_val = aug[k * w + k].abs();
        for i in (k + 1)..n {
            let v = aug[i * w + k].abs();
            if v > max_val {
                max_val = v;
                max_row = i;
            }
        }

        if max_row != k {
            for j in 0..w {
                aug.swap(k * w + j, max_row * w + j);
            }
        }

        let pivot = aug[k * w + k];
        for j in 0..w {
            aug[k * w + j] /= pivot;
        }

        for i in 0..n {
            if i != k {
                let factor = aug[i * w + k];
                for j in 0..w {
                    aug[i * w + j] -= factor * aug[k * w + j];
                }
            }
        }
    }

    // Extract inverse
    let mut inv = vec![0.0; n * n];
    for i in 0..n {
        for j in 0..n {
            inv[i * n + j] = aug[i * w + n + j];
        }
    }
    inv
}

/// Trace of product A * B.
fn matrix_trace_product(a: &[f64], b: &[f64], n: usize) -> f64 {
    let mut trace = 0.0;
    for i in 0..n {
        for k in 0..n {
            trace += a[i * n + k] * b[k * n + i];
        }
    }
    trace
}

/// Log of the multivariate gamma function.
///
/// Γₚ(a) = π^(p(p-1)/4) ∏_{j=1}^{p} Γ(a + (1-j)/2)
fn log_multivariate_gamma(a: f64, p: usize) -> f64 {
    let pf = p as f64;
    let mut result = pf * (pf - 1.0) / 4.0 * std::f64::consts::PI.ln();
    for j in 1..=p {
        result += special::lgamma(a + (1.0 - j as f64) / 2.0);
    }
    result
}

#[cfg(test)]
mod tests {
    use super::*;

    fn identity(p: usize) -> Vec<f64> {
        let mut m = vec![0.0; p * p];
        for i in 0..p {
            m[i * p + i] = 1.0;
        }
        m
    }

    #[test]
    fn test_wishart_creation() {
        let w = Wishart::new(3.0, identity(2), 2).unwrap();
        assert_eq!(w.p(), 2);
        assert!((w.df() - 3.0).abs() < 1e-10);

        // df < p should fail
        assert!(Wishart::new(1.0, identity(2), 2).is_err());
        // Wrong matrix size
        assert!(Wishart::new(3.0, vec![1.0], 2).is_err());
    }

    #[test]
    fn test_wishart_mean() {
        let w = Wishart::new(5.0, identity(2), 2).unwrap();
        let mean = w.mean_matrix();
        // Mean = ν * I = 5 * I
        assert!((mean[0] - 5.0).abs() < 1e-10); // (0,0)
        assert!((mean[1] - 0.0).abs() < 1e-10); // (0,1)
        assert!((mean[3] - 5.0).abs() < 1e-10); // (1,1)
    }

    #[test]
    fn test_wishart_mode() {
        let w = Wishart::new(5.0, identity(2), 2).unwrap();
        let mode = w.mode_matrix().unwrap();
        // Mode = (ν - p - 1) * V = 2 * I
        assert!((mode[0] - 2.0).abs() < 1e-10);
        assert!((mode[3] - 2.0).abs() < 1e-10);

        // df = p, no mode
        let w2 = Wishart::new(2.0, identity(2), 2).unwrap();
        assert!(w2.mode_matrix().is_none());
    }

    #[test]
    fn test_wishart_pdf_positive() {
        let w = Wishart::new(5.0, identity(2), 2).unwrap();
        // Test at identity
        let pdf_val = w.pdf(&identity(2));
        assert!(pdf_val > 0.0);
        assert!(pdf_val.is_finite());
    }

    #[test]
    fn test_wishart_log_det() {
        // Identity matrix: det = 1, log_det = 0
        assert!((log_det(&identity(3), 3) - 0.0).abs() < 1e-10);

        // 2x2 diagonal matrix [[2,0],[0,3]]: det = 6
        let m = vec![2.0, 0.0, 0.0, 3.0];
        assert!((log_det(&m, 2) - 6.0_f64.ln()).abs() < 1e-10);
    }

    #[test]
    fn test_wishart_matrix_inverse() {
        let m = vec![2.0, 1.0, 1.0, 3.0];
        let inv = matrix_inverse(&m, 2);
        // For [[2,1],[1,3]], det=5, inv = [[3/5, -1/5],[-1/5, 2/5]]
        assert!((inv[0] - 0.6).abs() < 1e-10);
        assert!((inv[1] - (-0.2)).abs() < 1e-10);
        assert!((inv[2] - (-0.2)).abs() < 1e-10);
        assert!((inv[3] - 0.4).abs() < 1e-10);
    }

    #[test]
    fn test_wishart_distribution_trait() {
        let w = Wishart::new(10.0, identity(3), 3).unwrap();
        assert!(w.mean().is_finite());
        assert!(w.var() > 0.0);
        assert!(w.entropy().is_finite());
        assert!(w.skewness() > 0.0);
        assert!(w.kurtosis() > 0.0);
    }
}