slow5lib-sys 0.2.0

Low-level bindings to the slow5lib C library
Documentation 
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CC			= cc
SRC			= ../src
LIB			= ../lib
CPPFLAGS	+= -I ../include/ -I $(SRC)/
#CFLAGS		+= -g -Wall -Werror -Wpedantic -std=c99
CFLAGS		+= -g -Wall -Werror -std=gnu99
LDFLAGS		+= $(LIB)/libslow5.a -lm -lz
ifeq ($(zstd),1)
CFLAGS		+= -DSLOW5_USE_ZSTD
LDFLAGS		+= -lzstd
endif
BIN_DIR		= bin

TESTS = $(BIN_DIR)/endian_test \
	$(BIN_DIR)/unit_test_helpers \
	$(BIN_DIR)/unit_test_press \
	$(BIN_DIR)/unit_test_ascii \
	$(BIN_DIR)/unit_test_binary \
	$(BIN_DIR)/convert_slow5_test \
	$(BIN_DIR)/unit_test_two_rg \
	$(BIN_DIR)/unit_test_lossless \
	$(BIN_DIR)/unit_test_empty \
	$(BIN_DIR)/unit_test_enum

all: $(BIN_DIR) $(TESTS)

$(BIN_DIR):
	mkdir $@

$(BIN_DIR)/endian_test: endian_test.c
	$(CC) $(CFLAGS) $< -o $@

$(BIN_DIR)/unit_test_helpers: unit_test_helpers.c unit_test.h $(LIB)/libslow5.a $(SRC)/slow5_extra.h $(SRC)/slow5_misc.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/unit_test_press: unit_test_press.c unit_test.h $(LIB)/libslow5.a
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/unit_test_ascii: unit_test_ascii.c unit_test.h $(LIB)/libslow5.a $(SRC)/slow5_extra.h $(SRC)/slow5_misc.h $(SRC)/slow5_idx.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/unit_test_binary: unit_test_binary.c unit_test.h $(LIB)/libslow5.a $(SRC)/slow5_extra.h $(SRC)/slow5_misc.h $(SRC)/slow5_idx.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/convert_slow5_test: convert_slow5_test.c unit_test.h $(LIB)/libslow5.a
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/unit_test_two_rg: unit_test_two_rg.c unit_test.h $(LIB)/libslow5.a $(SRC)/slow5_extra.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/unit_test_lossless: unit_test_lossless.c unit_test.h $(LIB)/libslow5.a $(SRC)/slow5_extra.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/unit_test_empty: unit_test_empty.c unit_test.h $(LIB)/libslow5.a $(SRC)/slow5_extra.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

$(BIN_DIR)/unit_test_enum: unit_test_enum.c unit_test.h $(LIB)/libslow5.a $(SRC)/slow5_extra.h $(SRC)/slow5_misc.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -o $@ $(LDFLAGS)

clean:
	rm -rf $(TESTS) $(BIN_DIR)