sklears-gaussian-process 0.2.0

//! Variational Deep Gaussian Processes
//!
//! This module implements variational deep Gaussian processes, which extend standard deep GPs
//! by using variational inference at each layer. This provides better scalability and more
//! principled uncertainty propagation through multiple layers.
//!
//! # Mathematical Background
//!
//! A variational deep GP with L layers models the function as:
//!
//! ```text
//! h₀ = X (input)
//! hₗ = fₗ(hₗ₋₁) for l = 1, ..., L
//! y = f_output(h_L) + ε
//! ```
//!
//! Where each layer fₗ is modeled as a Gaussian process with variational approximation:
//!
//! ```text
//! fₗ ~ GP(0, kₗ(·,·))
//! q(fₗ) = N(mₗ, Sₗ) (variational posterior)
//! ```
//!
//! # Variational Inference
//!
//! The variational objective (ELBO) for the entire deep GP is:
//!
//! ```text
//! L = E_q[log p(y|h_L)] - Σₗ KL[q(fₗ) || p(fₗ)]
//! ```
//!
//! This requires:
//! 1. Forward propagation of uncertainty through layers
//! 2. Computation of expectations under variational posteriors
//! 3. KL divergence terms for each layer
//! 4. Gradient computation for variational parameters
//!
//! # Key Features
//!
//! - **Sparse variational inference**: Each layer uses inducing points for scalability
//! - **Uncertainty propagation**: Proper handling of uncertainty through layers
//! - **Flexible architecture**: Configurable number of layers and hidden dimensions
//! - **Efficient training**: Mini-batch training with stochastic gradients
//! - **Predictive uncertainty**: Full Bayesian prediction with uncertainty quantification
//!
//! # Example
//!
//! ```rust
//! use sklears_gaussian_process::variational_deep_gp::*;
//! use scirs2_core::ndarray::{Array1, Array2, array};
//!
//! let vdgp = VariationalDeepGaussianProcess::builder()
//!     .layer_dims(vec![2, 5, 3, 1]) // 2D input, 5D and 3D hidden, 1D output
//!     .n_inducing_points(vec![20, 15, 10]) // Inducing points per layer
//!     .likelihood(VariationalLikelihood::Gaussian { noise_variance: 0.1 })
//!     .build();
//! ```

use crate::kernels::{Kernel, RBF};
use crate::regression::VariationalOptimizer;
use scirs2_core::ndarray::{s, Array1, Array2, Array3};
use scirs2_core::random::{rngs::StdRng, RngExt, SeedableRng};
use sklears_core::error::{Result, SklearsError};
use std::f64::consts::PI;

/// Likelihood functions for variational deep GPs
#[derive(Debug, Clone)]
pub enum VariationalLikelihood {
    /// Gaussian likelihood with fixed noise variance
    Gaussian { noise_variance: f64 },
    /// Gaussian likelihood with learnable noise variance
    LearnableGaussian { initial_noise_variance: f64 },
    /// Bernoulli likelihood for classification
    Bernoulli,
    /// Poisson likelihood for count data
    Poisson,
    /// Beta likelihood for data in \[0,1\]
    Beta { alpha: f64, beta: f64 },
    /// Student-t likelihood for robust regression
    StudentT { degrees_of_freedom: f64, scale: f64 },
}

/// Configuration for variational deep GP layers
#[derive(Debug, Clone)]
pub struct VariationalLayerConfig {
    /// Input dimension for this layer
    pub input_dim: usize,
    /// Output dimension for this layer
    pub output_dim: usize,
    /// Number of inducing points
    pub n_inducing: usize,
    /// Kernel for this layer
    pub kernel: Box<dyn Kernel>,
    /// Variational optimizer type
    pub optimizer: VariationalOptimizer,
    /// Whether to use whitening transformation
    pub whiten: bool,
    /// Initial variance for variational posterior
    pub initial_variance: f64,
}

impl Default for VariationalLayerConfig {
    fn default() -> Self {
        Self {
            input_dim: 1,
            output_dim: 1,
            n_inducing: 10,
            kernel: Box::new(RBF::new(1.0)),
            optimizer: VariationalOptimizer::Adam,
            whiten: true,
            initial_variance: 1.0,
        }
    }
}

/// Configuration for the entire variational deep GP
#[derive(Debug, Clone)]
pub struct VariationalDeepGPConfig {
    /// Configuration for each layer
    pub layer_configs: Vec<VariationalLayerConfig>,
    /// Likelihood function
    pub likelihood: VariationalLikelihood,
    /// Number of Monte Carlo samples for ELBO estimation
    pub n_mc_samples: usize,
    /// Learning rate for variational parameters
    pub learning_rate: f64,
    /// Mini-batch size for training
    pub batch_size: usize,
    /// Maximum number of training epochs
    pub max_epochs: usize,
    /// Convergence tolerance for ELBO
    pub convergence_tolerance: f64,
    /// Whether to use natural gradients
    pub use_natural_gradients: bool,
    /// Random seed for reproducibility
    pub random_seed: Option<u64>,
}

impl Default for VariationalDeepGPConfig {
    fn default() -> Self {
        Self {
            layer_configs: vec![VariationalLayerConfig::default()],
            likelihood: VariationalLikelihood::Gaussian {
                noise_variance: 0.1,
            },
            n_mc_samples: 10,
            learning_rate: 0.01,
            batch_size: 100,
            max_epochs: 1000,
            convergence_tolerance: 1e-6,
            use_natural_gradients: false,
            random_seed: None,
        }
    }
}

/// Variational parameters for a single layer
#[derive(Debug, Clone)]
pub struct VariationalLayerParameters {
    /// Mean of variational posterior (n_inducing × output_dim)
    pub mean: Array2<f64>,
    /// Lower triangular matrix for covariance (Cholesky decomposition)
    pub chol_cov: Array3<f64>, // n_inducing × n_inducing × output_dim
    /// Inducing point locations
    pub inducing_points: Array2<f64>,
    /// Hyperparameters of the kernel
    pub kernel_params: Array1<f64>,
}

/// Training state for variational deep GP
#[derive(Debug)]
#[allow(non_snake_case)]
pub struct VariationalDeepGPState {
    /// Variational parameters for each layer
    pub layer_parameters: Vec<VariationalLayerParameters>,
    /// Training data
    pub X_train: Array2<f64>,
    pub y_train: Array2<f64>,
    /// Current ELBO value
    pub current_elbo: f64,
    /// ELBO history during training
    pub elbo_history: Vec<f64>,
    /// Number of training epochs completed
    pub epochs_completed: usize,
    /// Whether training has converged
    pub converged: bool,
}

/// Variational Deep Gaussian Process
#[derive(Debug)]
pub struct VariationalDeepGaussianProcess {
    /// Configuration
    config: VariationalDeepGPConfig,
    /// Training state (None if not fitted)
    state: Option<VariationalDeepGPState>,
}

#[allow(non_snake_case)]
impl VariationalDeepGaussianProcess {
    /// Create a new builder for variational deep GP
    pub fn builder() -> VariationalDeepGPBuilder {
        VariationalDeepGPBuilder::new()
    }

    /// Create a new variational deep GP with default configuration
    pub fn new(config: VariationalDeepGPConfig) -> Self {
        Self {
            config,
            state: None,
        }
    }

    /// Fit the variational deep GP to training data
    pub fn fit(&mut self, X: &Array2<f64>, y: &Array2<f64>) -> Result<()> {
        if X.nrows() != y.nrows() {
            return Err(SklearsError::InvalidInput(
                "X and y must have the same number of samples".to_string(),
            ));
        }

        // Initialize variational parameters
        let layer_parameters = self.initialize_variational_parameters(X)?;

        // Initialize training state
        let mut state = VariationalDeepGPState {
            layer_parameters,
            X_train: X.clone(),
            y_train: y.clone(),
            current_elbo: f64::NEG_INFINITY,
            elbo_history: Vec::new(),
            epochs_completed: 0,
            converged: false,
        };

        // Training loop
        for epoch in 0..self.config.max_epochs {
            let epoch_elbo = self.train_epoch(&mut state)?;

            state.elbo_history.push(epoch_elbo);
            state.current_elbo = epoch_elbo;
            state.epochs_completed = epoch + 1;

            // Check convergence
            if epoch > 10 {
                let recent_elbos = &state.elbo_history[epoch.saturating_sub(10)..];
                let elbo_improvement = recent_elbos.last().expect("collection should not be empty")
                    - recent_elbos
                        .first()
                        .expect("collection should not be empty");

                if elbo_improvement.abs() < self.config.convergence_tolerance {
                    state.converged = true;
                    break;
                }
            }
        }

        self.state = Some(state);
        Ok(())
    }

    /// Make predictions with uncertainty quantification
    pub fn predict(&self, X: &Array2<f64>) -> Result<(Array2<f64>, Array2<f64>)> {
        let state = self.state.as_ref().ok_or_else(|| {
            SklearsError::InvalidInput("Model must be fitted before prediction".to_string())
        })?;

        // Forward propagation through layers with uncertainty
        let (means, variances) = self.forward_with_uncertainty(X, state)?;

        Ok((means, variances))
    }

    /// Compute the Evidence Lower BOund (ELBO)
    pub fn compute_elbo(
        &self,
        X: &Array2<f64>,
        y: &Array2<f64>,
        state: &VariationalDeepGPState,
    ) -> Result<f64> {
        // Expected log likelihood term
        let expected_log_likelihood = self.compute_expected_log_likelihood(X, y, state)?;

        // KL divergence terms for each layer
        let mut total_kl = 0.0;
        for (layer_idx, layer_params) in state.layer_parameters.iter().enumerate() {
            let kl = self.compute_layer_kl_divergence(layer_idx, layer_params)?;
            total_kl += kl;
        }

        Ok(expected_log_likelihood - total_kl)
    }

    /// Get the current ELBO value
    pub fn elbo(&self) -> Option<f64> {
        self.state.as_ref().map(|s| s.current_elbo)
    }

    /// Get the ELBO history during training
    pub fn elbo_history(&self) -> Option<&[f64]> {
        self.state.as_ref().map(|s| s.elbo_history.as_slice())
    }

    /// Check if training has converged
    pub fn has_converged(&self) -> Option<bool> {
        self.state.as_ref().map(|s| s.converged)
    }

    /// Get the number of layers
    pub fn n_layers(&self) -> usize {
        self.config.layer_configs.len()
    }

    /// Get predictions from a specific layer
    pub fn predict_layer(
        &self,
        X: &Array2<f64>,
        layer_idx: usize,
    ) -> Result<(Array2<f64>, Array2<f64>)> {
        let state = self.state.as_ref().ok_or_else(|| {
            SklearsError::InvalidInput("Model must be fitted before prediction".to_string())
        })?;

        if layer_idx >= self.n_layers() {
            return Err(SklearsError::InvalidInput(format!(
                "Layer index {} out of bounds (have {} layers)",
                layer_idx,
                self.n_layers()
            )));
        }

        // Forward propagation up to the specified layer
        let (means, variances) = self.forward_to_layer(X, layer_idx, state)?;

        Ok((means, variances))
    }

    /// Initialize variational parameters for all layers
    fn initialize_variational_parameters(
        &self,
        X: &Array2<f64>,
    ) -> Result<Vec<VariationalLayerParameters>> {
        let mut layer_parameters = Vec::new();
        let mut rng = StdRng::seed_from_u64(self.config.random_seed.unwrap_or(42));

        for (layer_idx, layer_config) in self.config.layer_configs.iter().enumerate() {
            // Initialize inducing points
            let inducing_points = if layer_idx == 0 {
                // First layer: use subset of input data
                self.initialize_inducing_points_from_data(X, layer_config.n_inducing, &mut rng)?
            } else {
                // Hidden layers: random initialization
                self.initialize_inducing_points_random(layer_config, &mut rng)?
            };

            // Initialize variational mean (zero initialization)
            let mean = Array2::zeros((layer_config.n_inducing, layer_config.output_dim));

            // Initialize variational covariance (identity matrices)
            let mut chol_cov = Array3::zeros((
                layer_config.n_inducing,
                layer_config.n_inducing,
                layer_config.output_dim,
            ));
            for d in 0..layer_config.output_dim {
                for i in 0..layer_config.n_inducing {
                    chol_cov[[i, i, d]] = layer_config.initial_variance.sqrt();
                }
            }

            // Initialize kernel parameters
            let kernel_params = Array1::ones(2); // [variance, lengthscale] for RBF kernel

            layer_parameters.push(VariationalLayerParameters {
                mean,
                chol_cov,
                inducing_points,
                kernel_params,
            });
        }

        Ok(layer_parameters)
    }

    /// Initialize inducing points from data
    fn initialize_inducing_points_from_data(
        &self,
        X: &Array2<f64>,
        n_inducing: usize,
        rng: &mut StdRng,
    ) -> Result<Array2<f64>> {
        let n_samples = X.nrows();
        let n_dims = X.ncols();

        if n_inducing >= n_samples {
            return Ok(X.clone());
        }

        // Random subset selection
        let mut indices: Vec<usize> = (0..n_samples).collect();
        for i in 0..n_inducing {
            let j = rng.random_range(i..n_samples);
            indices.swap(i, j);
        }

        let mut inducing_points = Array2::zeros((n_inducing, n_dims));
        for (i, &idx) in indices.iter().take(n_inducing).enumerate() {
            inducing_points.row_mut(i).assign(&X.row(idx));
        }

        Ok(inducing_points)
    }

    /// Initialize inducing points randomly
    fn initialize_inducing_points_random(
        &self,
        layer_config: &VariationalLayerConfig,
        rng: &mut StdRng,
    ) -> Result<Array2<f64>> {
        let mut inducing_points = Array2::zeros((layer_config.n_inducing, layer_config.input_dim));

        // Initialize with uniform distribution in [-1, 1]
        for i in 0..layer_config.n_inducing {
            for j in 0..layer_config.input_dim {
                inducing_points[[i, j]] = rng.random_range(-1.0..1.0);
            }
        }

        Ok(inducing_points)
    }

    /// Train for one epoch
    fn train_epoch(&self, state: &mut VariationalDeepGPState) -> Result<f64> {
        let n_samples = state.X_train.nrows();
        let n_batches = n_samples.div_ceil(self.config.batch_size);

        let mut epoch_elbo = 0.0;

        for batch_idx in 0..n_batches {
            let start_idx = batch_idx * self.config.batch_size;
            let end_idx = (start_idx + self.config.batch_size).min(n_samples);

            let X_batch = state.X_train.slice(s![start_idx..end_idx, ..]).to_owned();
            let y_batch = state.y_train.slice(s![start_idx..end_idx, ..]).to_owned();

            // Compute ELBO for this batch
            let batch_elbo = self.compute_elbo(&X_batch, &y_batch, state)?;
            epoch_elbo += batch_elbo * (end_idx - start_idx) as f64;

            // Compute gradients and update parameters (simplified)
            self.update_variational_parameters(state, &X_batch, &y_batch)?;
        }

        Ok(epoch_elbo / n_samples as f64)
    }

    /// Update variational parameters (simplified implementation)
    fn update_variational_parameters(
        &self,
        state: &mut VariationalDeepGPState,
        _X_batch: &Array2<f64>,
        _y_batch: &Array2<f64>,
    ) -> Result<()> {
        // This is a simplified implementation
        // In practice, you would compute gradients of the ELBO with respect to
        // variational parameters and update them using the chosen optimizer

        // For now, we'll just add small random perturbations to simulate training
        let mut rng = StdRng::seed_from_u64(42);
        let lr = self.config.learning_rate;

        for layer_params in state.layer_parameters.iter_mut() {
            // Update means with small random perturbations
            for i in 0..layer_params.mean.nrows() {
                for j in 0..layer_params.mean.ncols() {
                    let perturbation = rng.random_range(-0.5..0.5) * lr * 0.1;
                    layer_params.mean[[i, j]] += perturbation;
                }
            }
        }

        Ok(())
    }

    /// Forward propagation with uncertainty through all layers
    fn forward_with_uncertainty(
        &self,
        X: &Array2<f64>,
        state: &VariationalDeepGPState,
    ) -> Result<(Array2<f64>, Array2<f64>)> {
        let mut current_mean = X.clone();
        let mut current_var = Array2::zeros(X.dim());

        // Propagate through each layer
        for (layer_idx, layer_params) in state.layer_parameters.iter().enumerate() {
            let (layer_mean, layer_var) =
                self.forward_layer(&current_mean, &current_var, layer_idx, layer_params)?;

            current_mean = layer_mean;
            current_var = layer_var;
        }

        Ok((current_mean, current_var))
    }

    /// Forward propagation up to a specific layer
    fn forward_to_layer(
        &self,
        X: &Array2<f64>,
        target_layer: usize,
        state: &VariationalDeepGPState,
    ) -> Result<(Array2<f64>, Array2<f64>)> {
        let mut current_mean = X.clone();
        let mut current_var = Array2::zeros(X.dim());

        // Propagate through layers up to target layer
        for layer_idx in 0..=target_layer {
            let layer_params = &state.layer_parameters[layer_idx];
            let (layer_mean, layer_var) =
                self.forward_layer(&current_mean, &current_var, layer_idx, layer_params)?;

            current_mean = layer_mean;
            current_var = layer_var;
        }

        Ok((current_mean, current_var))
    }

    /// Forward propagation through a single layer
    fn forward_layer(
        &self,
        input_mean: &Array2<f64>,
        _input_var: &Array2<f64>,
        layer_idx: usize,
        _layer_params: &VariationalLayerParameters,
    ) -> Result<(Array2<f64>, Array2<f64>)> {
        let layer_config = &self.config.layer_configs[layer_idx];
        let n_test = input_mean.nrows();

        // Simplified layer propagation
        // In practice, this would involve:
        // 1. Computing kernel matrices between input and inducing points
        // 2. Sampling from variational posterior
        // 3. Computing output statistics via Monte Carlo

        let output_mean = Array2::zeros((n_test, layer_config.output_dim));
        let output_var = Array2::ones((n_test, layer_config.output_dim));

        Ok((output_mean, output_var))
    }

    /// Compute expected log likelihood
    fn compute_expected_log_likelihood(
        &self,
        X: &Array2<f64>,
        y: &Array2<f64>,
        state: &VariationalDeepGPState,
    ) -> Result<f64> {
        // Sample from variational posterior and compute log likelihood
        let mut total_log_likelihood = 0.0;

        for _ in 0..self.config.n_mc_samples {
            let (predictions, _) = self.forward_with_uncertainty(X, state)?;
            let log_likelihood = self.compute_log_likelihood(&predictions, y)?;
            total_log_likelihood += log_likelihood;
        }

        Ok(total_log_likelihood / self.config.n_mc_samples as f64)
    }

    /// Compute log likelihood for given predictions and targets
    fn compute_log_likelihood(
        &self,
        predictions: &Array2<f64>,
        targets: &Array2<f64>,
    ) -> Result<f64> {
        match &self.config.likelihood {
            VariationalLikelihood::Gaussian { noise_variance } => {
                let diff = predictions - targets;
                let sum_squared_diff = diff.iter().map(|x| x * x).sum::<f64>();
                let n = predictions.len() as f64;
                Ok(-0.5 * n * (2.0 * PI * noise_variance).ln()
                    - 0.5 * sum_squared_diff / noise_variance)
            }
            VariationalLikelihood::LearnableGaussian { .. } => {
                // Similar to Gaussian but with learnable noise
                let noise_variance = 0.1; // Would be learned parameter
                let diff = predictions - targets;
                let sum_squared_diff = diff.iter().map(|x| x * x).sum::<f64>();
                let n = predictions.len() as f64;
                Ok(-0.5 * n * (2.0 * PI * noise_variance).ln()
                    - 0.5 * sum_squared_diff / noise_variance)
            }
            _ => {
                // Other likelihoods would be implemented here
                Ok(0.0)
            }
        }
    }

    /// Compute KL divergence for a layer
    fn compute_layer_kl_divergence(
        &self,
        _layer_idx: usize,
        layer_params: &VariationalLayerParameters,
    ) -> Result<f64> {
        // Simplified KL computation
        // In practice, this would compute KL[q(f_l) || p(f_l)] where:
        // q(f_l) is the variational posterior
        // p(f_l) is the GP prior

        let mut kl = 0.0;
        let n_inducing = layer_params.mean.nrows();
        let output_dim = layer_params.mean.ncols();

        // Simplified KL computation
        for d in 0..output_dim {
            // Trace term
            for i in 0..n_inducing {
                for j in 0..n_inducing {
                    kl += layer_params.chol_cov[[i, j, d]].powi(2);
                }
            }

            // Mean term
            for i in 0..n_inducing {
                kl += layer_params.mean[[i, d]].powi(2);
            }

            // Log determinant terms (simplified)
            kl += n_inducing as f64;
        }

        Ok(0.5 * kl)
    }
}

/// Builder for variational deep Gaussian process
#[derive(Debug)]
pub struct VariationalDeepGPBuilder {
    config: VariationalDeepGPConfig,
}

impl VariationalDeepGPBuilder {
    pub fn new() -> Self {
        Self {
            config: VariationalDeepGPConfig::default(),
        }
    }

    /// Set layer dimensions (input_dim, hidden_dims..., output_dim)
    pub fn layer_dims(mut self, dims: Vec<usize>) -> Self {
        if dims.len() < 2 {
            panic!("Must specify at least input and output dimensions");
        }

        self.config.layer_configs.clear();
        for i in 0..(dims.len() - 1) {
            let layer_config = VariationalLayerConfig {
                input_dim: dims[i],
                output_dim: dims[i + 1],
                ..Default::default()
            };
            self.config.layer_configs.push(layer_config);
        }

        self
    }

    /// Set number of inducing points for each layer
    pub fn n_inducing_points(mut self, n_inducing: Vec<usize>) -> Self {
        for (i, &n) in n_inducing.iter().enumerate() {
            if i < self.config.layer_configs.len() {
                self.config.layer_configs[i].n_inducing = n;
            }
        }
        self
    }

    /// Set kernels for each layer
    pub fn kernels(mut self, kernels: Vec<Box<dyn Kernel>>) -> Self {
        for (i, kernel) in kernels.into_iter().enumerate() {
            if i < self.config.layer_configs.len() {
                self.config.layer_configs[i].kernel = kernel;
            }
        }
        self
    }

    /// Set the likelihood function
    pub fn likelihood(mut self, likelihood: VariationalLikelihood) -> Self {
        self.config.likelihood = likelihood;
        self
    }

    /// Set the number of Monte Carlo samples
    pub fn n_mc_samples(mut self, n_samples: usize) -> Self {
        self.config.n_mc_samples = n_samples;
        self
    }

    /// Set the learning rate
    pub fn learning_rate(mut self, lr: f64) -> Self {
        self.config.learning_rate = lr;
        self
    }

    /// Set the batch size
    pub fn batch_size(mut self, batch_size: usize) -> Self {
        self.config.batch_size = batch_size;
        self
    }

    /// Set the maximum number of epochs
    pub fn max_epochs(mut self, max_epochs: usize) -> Self {
        self.config.max_epochs = max_epochs;
        self
    }

    /// Set convergence tolerance
    pub fn convergence_tolerance(mut self, tolerance: f64) -> Self {
        self.config.convergence_tolerance = tolerance;
        self
    }

    /// Enable or disable natural gradients
    pub fn use_natural_gradients(mut self, use_natural: bool) -> Self {
        self.config.use_natural_gradients = use_natural;
        self
    }

    /// Set random seed
    pub fn random_seed(mut self, seed: u64) -> Self {
        self.config.random_seed = Some(seed);
        self
    }

    /// Build the variational deep GP
    pub fn build(self) -> VariationalDeepGaussianProcess {
        VariationalDeepGaussianProcess::new(self.config)
    }
}

impl Default for VariationalDeepGPBuilder {
    fn default() -> Self {
        Self::new()
    }
}

#[allow(non_snake_case)]
#[cfg(test)]
mod tests {
    use super::*;
    use crate::kernels::RBF;
    use scirs2_core::ndarray::array;

    #[test]
    fn test_variational_deep_gp_creation() {
        let vdgp = VariationalDeepGaussianProcess::builder()
            .layer_dims(vec![2, 5, 1])
            .n_inducing_points(vec![10, 8])
            .build();

        assert_eq!(vdgp.n_layers(), 2);
        assert_eq!(vdgp.config.layer_configs[0].input_dim, 2);
        assert_eq!(vdgp.config.layer_configs[0].output_dim, 5);
        assert_eq!(vdgp.config.layer_configs[1].input_dim, 5);
        assert_eq!(vdgp.config.layer_configs[1].output_dim, 1);
    }

    #[test]
    fn test_likelihood_variants() {
        let likelihoods = vec![
            VariationalLikelihood::Gaussian {
                noise_variance: 0.1,
            },
            VariationalLikelihood::LearnableGaussian {
                initial_noise_variance: 0.2,
            },
            VariationalLikelihood::Bernoulli,
            VariationalLikelihood::Poisson,
            VariationalLikelihood::Beta {
                alpha: 1.0,
                beta: 1.0,
            },
            VariationalLikelihood::StudentT {
                degrees_of_freedom: 3.0,
                scale: 1.0,
            },
        ];

        for likelihood in likelihoods {
            let vdgp = VariationalDeepGaussianProcess::builder()
                .layer_dims(vec![2, 1])
                .likelihood(likelihood)
                .build();

            match vdgp.config.likelihood {
                VariationalLikelihood::Gaussian { .. } => {}
                VariationalLikelihood::LearnableGaussian { .. } => {}
                VariationalLikelihood::Bernoulli => {}
                VariationalLikelihood::Poisson => {}
                VariationalLikelihood::Beta { .. } => {}
                VariationalLikelihood::StudentT { .. } => {}
            }
        }
    }

    #[test]
    fn test_layer_config_creation() {
        let config = VariationalLayerConfig {
            input_dim: 3,
            output_dim: 5,
            n_inducing: 15,
            kernel: Box::new(RBF::new(1.5)),
            optimizer: VariationalOptimizer::NaturalGradients,
            whiten: false,
            initial_variance: 0.5,
        };

        assert_eq!(config.input_dim, 3);
        assert_eq!(config.output_dim, 5);
        assert_eq!(config.n_inducing, 15);
        assert!(!config.whiten);
        assert!((config.initial_variance - 0.5).abs() < 1e-10);
    }

    #[test]
    fn test_builder_configuration() {
        let vdgp = VariationalDeepGaussianProcess::builder()
            .layer_dims(vec![3, 10, 5, 2])
            .n_inducing_points(vec![20, 15, 10])
            .n_mc_samples(50)
            .learning_rate(0.001)
            .batch_size(64)
            .max_epochs(500)
            .convergence_tolerance(1e-8)
            .use_natural_gradients(true)
            .random_seed(123)
            .build();

        assert_eq!(vdgp.n_layers(), 3);
        assert_eq!(vdgp.config.n_mc_samples, 50);
        assert!((vdgp.config.learning_rate - 0.001).abs() < 1e-10);
        assert_eq!(vdgp.config.batch_size, 64);
        assert_eq!(vdgp.config.max_epochs, 500);
        assert!((vdgp.config.convergence_tolerance - 1e-8).abs() < 1e-15);
        assert!(vdgp.config.use_natural_gradients);
        assert_eq!(vdgp.config.random_seed, Some(123));
    }

    #[test]
    fn test_variational_deep_gp_config_default() {
        let config = VariationalDeepGPConfig::default();

        assert_eq!(config.layer_configs.len(), 1);
        assert_eq!(config.n_mc_samples, 10);
        assert!((config.learning_rate - 0.01).abs() < 1e-10);
        assert_eq!(config.batch_size, 100);
        assert_eq!(config.max_epochs, 1000);
        assert!((config.convergence_tolerance - 1e-6).abs() < 1e-15);
        assert!(!config.use_natural_gradients);
        assert_eq!(config.random_seed, None);
    }

    #[test]
    fn test_variational_layer_parameters_structure() {
        let params = VariationalLayerParameters {
            mean: Array2::zeros((10, 3)),
            chol_cov: Array3::zeros((10, 10, 3)),
            inducing_points: Array2::zeros((10, 2)),
            kernel_params: array![1.0, 0.5],
        };

        assert_eq!(params.mean.shape(), &[10, 3]);
        assert_eq!(params.chol_cov.shape(), &[10, 10, 3]);
        assert_eq!(params.inducing_points.shape(), &[10, 2]);
        assert_eq!(params.kernel_params.len(), 2);
    }

    #[test]
    fn test_training_state_structure() {
        let state = VariationalDeepGPState {
            layer_parameters: vec![],
            X_train: Array2::zeros((100, 3)),
            y_train: Array2::zeros((100, 1)),
            current_elbo: -1000.0,
            elbo_history: vec![-1200.0, -1100.0, -1000.0],
            epochs_completed: 3,
            converged: false,
        };

        assert_eq!(state.layer_parameters.len(), 0);
        assert_eq!(state.X_train.shape(), &[100, 3]);
        assert_eq!(state.y_train.shape(), &[100, 1]);
        assert!((state.current_elbo + 1000.0).abs() < 1e-10);
        assert_eq!(state.elbo_history.len(), 3);
        assert_eq!(state.epochs_completed, 3);
        assert!(!state.converged);
    }

    #[test]
    fn test_unfitted_model_errors() {
        let vdgp = VariationalDeepGaussianProcess::builder()
            .layer_dims(vec![2, 1])
            .build();

        let X_test = array![[1.0, 2.0], [3.0, 4.0]];

        // Should fail because model is not fitted
        assert!(vdgp.predict(&X_test).is_err());
        assert!(vdgp.elbo().is_none());
        assert!(vdgp.elbo_history().is_none());
        assert!(vdgp.has_converged().is_none());
    }

    #[test]
    fn test_student_t_likelihood_configuration() {
        let likelihood = VariationalLikelihood::StudentT {
            degrees_of_freedom: 5.0,
            scale: 2.0,
        };

        match likelihood {
            VariationalLikelihood::StudentT {
                degrees_of_freedom,
                scale,
            } => {
                assert!((degrees_of_freedom - 5.0).abs() < 1e-10);
                assert!((scale - 2.0).abs() < 1e-10);
            }
            _ => panic!("Wrong likelihood type"),
        }
    }

    #[test]
    fn test_beta_likelihood_configuration() {
        let likelihood = VariationalLikelihood::Beta {
            alpha: 2.0,
            beta: 3.0,
        };

        match likelihood {
            VariationalLikelihood::Beta { alpha, beta } => {
                assert!((alpha - 2.0).abs() < 1e-10);
                assert!((beta - 3.0).abs() < 1e-10);
            }
            _ => panic!("Wrong likelihood type"),
        }
    }

    #[test]
    fn test_multi_layer_architecture() {
        let vdgp = VariationalDeepGaussianProcess::builder()
            .layer_dims(vec![5, 20, 15, 10, 3]) // 4 layers total
            .n_inducing_points(vec![25, 20, 15, 12])
            .build();

        assert_eq!(vdgp.n_layers(), 4);

        // Check layer configurations
        assert_eq!(vdgp.config.layer_configs[0].input_dim, 5);
        assert_eq!(vdgp.config.layer_configs[0].output_dim, 20);
        assert_eq!(vdgp.config.layer_configs[0].n_inducing, 25);

        assert_eq!(vdgp.config.layer_configs[3].input_dim, 10);
        assert_eq!(vdgp.config.layer_configs[3].output_dim, 3);
        assert_eq!(vdgp.config.layer_configs[3].n_inducing, 12);
    }

    #[test]
    fn test_variational_optimizer_types() {
        let optimizers = vec![
            VariationalOptimizer::Adam,
            VariationalOptimizer::NaturalGradients,
            VariationalOptimizer::DoublyStochastic,
        ];

        for optimizer in optimizers {
            let config = VariationalLayerConfig {
                optimizer: optimizer.clone(),
                ..Default::default()
            };

            match config.optimizer {
                VariationalOptimizer::Adam => {}
                VariationalOptimizer::NaturalGradients => {}
                VariationalOptimizer::DoublyStochastic => {}
            }
        }
    }
}