sklears-feature-extraction 0.2.0

Feature extraction from raw data (text, images)
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
//! Basic feature engineering utilities
//!
//! This module contains core feature engineering transformers including:
//! - Polynomial features for capturing non-linear relationships
//! - Spline basis functions for smooth curve fitting
//! - Radial basis functions for local non-linear transformations

use scirs2_core::ndarray::{Array2, ArrayView1, ArrayView2, Axis};
// use scirs2_core::numeric::Float as NumTraitsFloat;
use sklears_core::{
    error::Result as SklResult,
    prelude::{SklearsError, Transform},
    types::Float,
};

/// Polynomial Feature Generator
///
/// Generate polynomial and interaction features from input features.
/// This transformer can be used to capture non-linear relationships
/// by creating polynomial combinations of the original features.
///
/// # Parameters
///
/// * `degree` - Maximum degree of polynomial features
/// * `interaction_only` - If true, only interaction features are produced
/// * `include_bias` - If true, include a bias column of ones
///
/// # Examples
///
/// ```
/// use sklears_feature_extraction::basic_features::PolynomialFeatures;
/// use sklears_core::traits::{Transform, Fit};
/// use scirs2_core::ndarray::array;
///
/// let X = array![[1.0, 2.0], [3.0, 4.0], [5.0, 6.0]];
/// let poly = PolynomialFeatures::new()
///     .degree(2)
///     .include_bias(true);
///
/// let features = poly.transform(&X.view()).expect("valid input produces transform output");
/// ```
#[derive(Debug, Clone)]
pub struct PolynomialFeatures {
    degree: usize,
    interaction_only: bool,
    include_bias: bool,
}

#[allow(non_snake_case)] // X follows sklearn/math convention for feature matrix
impl PolynomialFeatures {
    /// Create a new PolynomialFeatures transformer
    pub fn new() -> Self {
        Self {
            degree: 2,
            interaction_only: false,
            include_bias: true,
        }
    }

    /// Set the maximum degree of polynomial features
    pub fn degree(mut self, degree: usize) -> Self {
        self.degree = degree;
        self
    }

    /// Set whether to produce only interaction features
    pub fn interaction_only(mut self, interaction_only: bool) -> Self {
        self.interaction_only = interaction_only;
        self
    }

    /// Set whether to include a bias column
    pub fn include_bias(mut self, include_bias: bool) -> Self {
        self.include_bias = include_bias;
        self
    }

    /// Transform input features to polynomial features
    pub fn transform(&self, X: &ArrayView2<Float>) -> SklResult<Array2<Float>> {
        let (n_samples, n_features) = X.dim();

        if self.degree == 0 && !self.include_bias {
            return Err(SklearsError::InvalidInput(
                "At least one of degree > 0 or include_bias=true must be specified".to_string(),
            ));
        }

        // Generate all polynomial combinations
        let combinations = self.generate_combinations(n_features)?;
        let n_output_features = combinations.len();

        let mut result = Array2::<Float>::zeros((n_samples, n_output_features));

        for (sample_idx, sample) in X.axis_iter(Axis(0)).enumerate() {
            for (feat_idx, combination) in combinations.iter().enumerate() {
                let mut value = 1.0;

                if combination.is_empty() {
                    // Bias term
                    value = 1.0;
                } else {
                    for &feature_idx in combination {
                        value *= sample[feature_idx];
                    }
                }

                result[[sample_idx, feat_idx]] = value;
            }
        }

        Ok(result)
    }

    /// Get feature names for the polynomial features
    pub fn get_feature_names(&self, input_features: Option<&[String]>) -> SklResult<Vec<String>> {
        let n_features = match input_features {
            Some(names) => names.len(),
            None => {
                return Err(SklearsError::InvalidInput(
                    "Input feature names must be provided".to_string(),
                ))
            }
        };

        let combinations = self.generate_combinations(n_features)?;
        let mut feature_names = Vec::new();

        for combination in combinations {
            if combination.is_empty() {
                // Bias term
                feature_names.push("1".to_string());
            } else if combination.len() == 1 {
                // Single feature
                feature_names.push(
                    input_features.expect("operation should succeed")[combination[0]].clone(),
                );
            } else {
                // Interaction features
                let mut name = String::new();
                for (i, &feature_idx) in combination.iter().enumerate() {
                    if i > 0 {
                        name.push(' ');
                    }
                    name.push_str(&input_features.expect("operation should succeed")[feature_idx]);
                }
                feature_names.push(name);
            }
        }

        Ok(feature_names)
    }

    /// Get the number of output features
    pub fn get_n_output_features(&self, n_input_features: usize) -> SklResult<usize> {
        let combinations = self.generate_combinations(n_input_features)?;
        Ok(combinations.len())
    }

    fn generate_combinations(&self, n_features: usize) -> SklResult<Vec<Vec<usize>>> {
        let mut combinations = Vec::new();

        // Add bias term if requested
        if self.include_bias {
            combinations.push(Vec::new());
        }

        // Generate combinations for each degree
        for degree in 1..=self.degree {
            let degree_combinations = if self.interaction_only {
                self.generate_interaction_combinations(n_features, degree)?
            } else {
                self.generate_degree_combinations(n_features, degree)?
            };
            combinations.extend(degree_combinations);
        }

        Ok(combinations)
    }

    fn generate_interaction_combinations(
        &self,
        n_features: usize,
        degree: usize,
    ) -> SklResult<Vec<Vec<usize>>> {
        let mut combinations = Vec::new();
        let mut current = vec![0; degree];

        self.generate_interaction_recursive(
            &mut combinations,
            &mut current,
            n_features,
            degree,
            0,
            0,
        );

        Ok(combinations)
    }

    fn generate_interaction_recursive(
        &self,
        combinations: &mut Vec<Vec<usize>>,
        current: &mut [usize],
        n_features: usize,
        degree: usize,
        pos: usize,
        start: usize,
    ) {
        if pos == degree {
            // All different features (interaction only)
            let mut unique_features = current.to_vec();
            unique_features.sort_unstable();
            unique_features.dedup();

            if unique_features.len() == degree {
                combinations.push(current.to_vec());
            }
            return;
        }

        for i in start..n_features {
            current[pos] = i;
            self.generate_interaction_recursive(
                combinations,
                current,
                n_features,
                degree,
                pos + 1,
                i + 1,
            );
        }
    }

    fn generate_degree_combinations(
        &self,
        n_features: usize,
        degree: usize,
    ) -> SklResult<Vec<Vec<usize>>> {
        let mut combinations = Vec::new();
        let mut current = vec![0; degree];

        self.generate_degree_recursive(&mut combinations, &mut current, n_features, degree, 0, 0);

        Ok(combinations)
    }

    fn generate_degree_recursive(
        &self,
        combinations: &mut Vec<Vec<usize>>,
        current: &mut [usize],
        n_features: usize,
        degree: usize,
        pos: usize,
        start: usize,
    ) {
        if pos == degree {
            combinations.push(current.to_vec());
            return;
        }

        for i in start..n_features {
            current[pos] = i;
            self.generate_degree_recursive(combinations, current, n_features, degree, pos + 1, i);
        }
    }
}

impl Default for PolynomialFeatures {
    fn default() -> Self {
        Self::new()
    }
}

#[allow(non_snake_case)] // X follows sklearn/math convention for feature matrix
impl Transform<ArrayView2<'_, Float>, Array2<Float>> for PolynomialFeatures {
    fn transform(&self, X: &ArrayView2<'_, Float>) -> SklResult<Array2<Float>> {
        self.transform(X)
    }
}

/// Spline Basis Functions Generator
///
/// Generate spline basis functions for non-linear feature transformation.
/// Supports B-splines and Natural Cubic Splines for smooth curve fitting
/// and feature engineering applications.
///
/// # Parameters
///
/// * `n_splines` - Number of spline basis functions to generate
/// * `degree` - Degree of the spline (1 for linear, 2 for quadratic, 3 for cubic)
/// * `spline_type` - Type of spline (B-spline or Natural Cubic)
/// * `knots` - Knot positions (if None, uniformly distributed knots are used)
/// * `extrapolation` - How to handle values outside the knot range
///
/// # Examples
///
/// ```
/// use sklears_feature_extraction::basic_features::{SplineBasisFunctions, SplineType};
/// use scirs2_core::ndarray::array;
///
/// let X = array![[0.0], [0.25], [0.5], [0.75], [1.0]];
/// let spline = SplineBasisFunctions::new()
///     .n_splines(5)
///     .degree(3)
///     .spline_type(SplineType::BSpline);
///
/// let features = spline.transform(&X.view()).expect("valid input produces transform output");
/// ```
#[derive(Debug, Clone)]
pub struct SplineBasisFunctions {
    n_splines: usize,
    degree: usize,
    spline_type: SplineType,
    knots: Option<Vec<Float>>,
    extrapolation: ExtrapolationMode,
}

#[derive(Debug, Clone, Copy)]
pub enum SplineType {
    /// B-spline basis functions
    BSpline,
    /// Natural cubic spline basis functions
    NaturalCubic,
    /// Truncated power basis functions
    TruncatedPower,
}

#[derive(Debug, Clone, Copy)]
pub enum ExtrapolationMode {
    /// Constant extrapolation (edge values)
    Constant,
    /// Linear extrapolation
    Linear,
    /// Zero outside the knot range
    Zero,
    /// Raise error for out-of-bounds values
    Error,
}

#[allow(non_snake_case)] // X follows sklearn/math convention for feature matrix
impl SplineBasisFunctions {
    /// Create a new SplineBasisFunctions transformer
    pub fn new() -> Self {
        Self {
            n_splines: 5,
            degree: 3,
            spline_type: SplineType::BSpline,
            knots: None,
            extrapolation: ExtrapolationMode::Constant,
        }
    }

    /// Set the number of spline basis functions
    pub fn n_splines(mut self, n_splines: usize) -> Self {
        self.n_splines = n_splines;
        self
    }

    /// Set the degree of the splines
    pub fn degree(mut self, degree: usize) -> Self {
        self.degree = degree;
        self
    }

    /// Set the type of spline
    pub fn spline_type(mut self, spline_type: SplineType) -> Self {
        self.spline_type = spline_type;
        self
    }

    /// Set custom knot positions
    pub fn knots(mut self, knots: Vec<Float>) -> Self {
        self.knots = Some(knots);
        self
    }

    /// Set extrapolation mode
    pub fn extrapolation(mut self, extrapolation: ExtrapolationMode) -> Self {
        self.extrapolation = extrapolation;
        self
    }

    /// Transform input data using spline basis functions
    pub fn transform(&self, X: &ArrayView2<Float>) -> SklResult<Array2<Float>> {
        if X.ncols() != 1 {
            return Err(SklearsError::InvalidInput(
                "SplineBasisFunctions currently supports only 1D input".to_string(),
            ));
        }

        let x_values: Vec<Float> = X.column(0).to_vec();
        let x_min = x_values.iter().cloned().fold(Float::INFINITY, Float::min);
        let x_max = x_values
            .iter()
            .cloned()
            .fold(Float::NEG_INFINITY, Float::max);

        // Generate knots if not provided
        let knots = match &self.knots {
            Some(knots) => knots.clone(),
            None => self.generate_uniform_knots(x_min, x_max)?,
        };

        match self.spline_type {
            SplineType::BSpline => self.compute_bspline_basis(&x_values, &knots),
            SplineType::NaturalCubic => self.compute_natural_cubic_basis(&x_values, &knots),
            SplineType::TruncatedPower => self.compute_truncated_power_basis(&x_values, &knots),
        }
    }

    fn generate_uniform_knots(&self, x_min: Float, x_max: Float) -> SklResult<Vec<Float>> {
        if x_min >= x_max {
            return Err(SklearsError::InvalidInput(
                "Invalid range for knot generation".to_string(),
            ));
        }

        let mut knots = Vec::new();

        match self.spline_type {
            SplineType::BSpline => {
                // For B-splines, we need additional knots at the boundaries
                let n_interior_knots = self.n_splines - self.degree - 1;
                let _total_knots = n_interior_knots + 2 * (self.degree + 1);

                let step = (x_max - x_min) / (n_interior_knots + 1) as Float;

                // Add boundary knots with multiplicity
                for _ in 0..=self.degree {
                    knots.push(x_min);
                }

                // Add interior knots
                for i in 1..=n_interior_knots {
                    knots.push(x_min + i as Float * step);
                }

                // Add boundary knots with multiplicity
                for _ in 0..=self.degree {
                    knots.push(x_max);
                }
            }
            SplineType::NaturalCubic | SplineType::TruncatedPower => {
                // For natural cubic and truncated power, use simple uniform spacing
                let step = (x_max - x_min) / (self.n_splines - 1) as Float;
                for i in 0..self.n_splines {
                    knots.push(x_min + i as Float * step);
                }
            }
        }

        Ok(knots)
    }

    fn compute_bspline_basis(
        &self,
        x_values: &[Float],
        knots: &[Float],
    ) -> SklResult<Array2<Float>> {
        let n_samples = x_values.len();
        let n_basis = self.n_splines;
        let mut basis_matrix = Array2::zeros((n_samples, n_basis));

        for (sample_idx, &x) in x_values.iter().enumerate() {
            let basis_values = self.evaluate_bspline_basis(x, knots)?;

            for (basis_idx, &value) in basis_values.iter().enumerate() {
                if basis_idx < n_basis {
                    basis_matrix[[sample_idx, basis_idx]] = value;
                }
            }
        }

        Ok(basis_matrix)
    }

    fn evaluate_bspline_basis(&self, x: Float, knots: &[Float]) -> SklResult<Vec<Float>> {
        let n_knots = knots.len();
        let degree = self.degree;
        let n_basis = n_knots - degree - 1;

        if n_basis == 0 {
            return Ok(vec![]);
        }

        let mut basis = vec![0.0; n_basis];

        // Handle extrapolation
        let (x_clamped, is_extrapolated, extrapolation_factor) = match self.extrapolation {
            ExtrapolationMode::Constant => (x.max(knots[0]).min(knots[n_knots - 1]), false, 0.0),
            ExtrapolationMode::Zero => {
                if x < knots[0] || x > knots[n_knots - 1] {
                    return Ok(basis); // All zeros
                }
                (x, false, 0.0)
            }
            ExtrapolationMode::Error => {
                if x < knots[0] || x > knots[n_knots - 1] {
                    return Err(SklearsError::InvalidInput(
                        "Value outside knot range".to_string(),
                    ));
                }
                (x, false, 0.0)
            }
            ExtrapolationMode::Linear => {
                if x < knots[0] {
                    // Linear extrapolation to the left
                    let boundary = knots[0];
                    let next_knot = if n_knots > 1 {
                        knots[1]
                    } else {
                        knots[0] + 1.0
                    };
                    let slope = 1.0 / (next_knot - boundary);
                    let factor = (x - boundary) * slope;
                    (boundary, true, factor)
                } else if x > knots[n_knots - 1] {
                    // Linear extrapolation to the right
                    let boundary = knots[n_knots - 1];
                    let prev_knot = if n_knots > 1 {
                        knots[n_knots - 2]
                    } else {
                        knots[n_knots - 1] - 1.0
                    };
                    let slope = 1.0 / (boundary - prev_knot);
                    let factor = (x - boundary) * slope;
                    (boundary, true, factor)
                } else {
                    (x, false, 0.0)
                }
            }
        };

        // De Boor's algorithm for B-spline evaluation
        // Start with degree 0 (piecewise constant)
        for i in 0..n_basis {
            if i + degree + 1 < n_knots && x_clamped >= knots[i] && x_clamped < knots[i + 1] {
                basis[i] = 1.0;
            }
        }

        // Handle the right boundary
        if (x_clamped - knots[n_knots - 1]).abs() < 1e-10 && n_basis > 0 {
            basis[n_basis - 1] = 1.0;
        }

        // Recursive computation for higher degrees
        for d in 1..=degree {
            let mut new_basis = vec![0.0; n_basis];

            for i in 0..n_basis {
                if i + d < n_knots && (knots[i + d] - knots[i]).abs() > 1e-10 {
                    let alpha = (x_clamped - knots[i]) / (knots[i + d] - knots[i]);
                    new_basis[i] += alpha * basis[i];
                }

                if i > 0 && i + d < n_knots && (knots[i + d] - knots[i]).abs() > 1e-10 {
                    let alpha = (knots[i + d] - x_clamped) / (knots[i + d] - knots[i]);
                    new_basis[i] += alpha * basis[i - 1];
                }
            }

            basis = new_basis;
        }

        // Apply linear extrapolation if needed
        if is_extrapolated && extrapolation_factor != 0.0 {
            // For linear extrapolation, scale the basis functions by the extrapolation factor
            // This provides a linear extension of the spline beyond the knot boundaries
            for value in basis.iter_mut() {
                *value *= 1.0 + extrapolation_factor.abs().min(10.0); // Cap the factor for numerical stability
            }
        }

        Ok(basis)
    }

    fn compute_natural_cubic_basis(
        &self,
        x_values: &[Float],
        knots: &[Float],
    ) -> SklResult<Array2<Float>> {
        let n_samples = x_values.len();
        let n_knots = knots.len();
        let n_basis = n_knots;
        let mut basis_matrix = Array2::zeros((n_samples, n_basis));

        if n_knots < 4 {
            return Err(SklearsError::InvalidInput(
                "Natural cubic splines require at least 4 knots".to_string(),
            ));
        }

        for (sample_idx, &x) in x_values.iter().enumerate() {
            // Linear basis functions
            basis_matrix[[sample_idx, 0]] = 1.0;
            basis_matrix[[sample_idx, 1]] = x;

            // Cubic basis functions
            for k in 2..n_basis {
                if k - 2 < n_knots - 2 {
                    let knot = knots[k - 2];
                    let _x_min = knots[0];
                    let x_max = knots[n_knots - 1];

                    let d_k = self.natural_cubic_basis_function(x, knot, x_max);
                    let d_n = self.natural_cubic_basis_function(x, x_max, x_max);

                    basis_matrix[[sample_idx, k]] = d_k - d_n;
                }
            }
        }

        Ok(basis_matrix)
    }

    fn natural_cubic_basis_function(&self, x: Float, knot: Float, _x_max: Float) -> Float {
        if x <= knot {
            0.0
        } else {
            let diff = x - knot;
            diff.powi(3) / 6.0
        }
    }

    fn compute_truncated_power_basis(
        &self,
        x_values: &[Float],
        knots: &[Float],
    ) -> SklResult<Array2<Float>> {
        let n_samples = x_values.len();
        let n_basis = self.n_splines;
        let mut basis_matrix = Array2::zeros((n_samples, n_basis));

        for (sample_idx, &x) in x_values.iter().enumerate() {
            // Polynomial terms
            for d in 0..=self.degree.min(n_basis - 1) {
                basis_matrix[[sample_idx, d]] = x.powi(d as i32);
            }

            // Truncated power functions
            for (basis_idx, &knot) in (self.degree + 1..).zip(knots.iter()) {
                if basis_idx >= n_basis {
                    break;
                }

                if x > knot {
                    basis_matrix[[sample_idx, basis_idx]] = (x - knot).powi(self.degree as i32);
                }
            }
        }

        Ok(basis_matrix)
    }
}

impl Default for SplineBasisFunctions {
    fn default() -> Self {
        Self::new()
    }
}

#[allow(non_snake_case)] // X follows sklearn/math convention for feature matrix
impl Transform<ArrayView2<'_, Float>, Array2<Float>> for SplineBasisFunctions {
    fn transform(&self, X: &ArrayView2<'_, Float>) -> SklResult<Array2<Float>> {
        self.transform(X)
    }
}

/// Radial Basis Functions Generator
///
/// Generate radial basis functions (RBFs) for non-linear feature transformation.
/// Supports various RBF types including Gaussian, Multiquadric, and Inverse Multiquadric.
///
/// # Parameters
///
/// * `n_centers` - Number of RBF centers
/// * `rbf_type` - Type of radial basis function
/// * `centers` - RBF center positions (if None, centers are determined from data)
/// * `shape_parameter` - Shape parameter for RBFs (affects function width)
/// * `normalize` - Whether to normalize the output features
///
/// # Examples
///
/// ```
/// use sklears_feature_extraction::basic_features::{RadialBasisFunctions, RBFType};
/// use scirs2_core::ndarray::array;
///
/// let X = array![[1.0, 2.0], [3.0, 4.0], [5.0, 6.0]];
/// let rbf = RadialBasisFunctions::new()
///     .n_centers(3)
///     .rbf_type(RBFType::Gaussian)
///     .shape_parameter(1.0);
///
/// let features = rbf.transform(&X.view()).expect("valid input produces transform output");
/// ```
#[derive(Debug, Clone)]
pub struct RadialBasisFunctions {
    n_centers: usize,
    rbf_type: RBFType,
    centers: Option<Array2<Float>>,
    shape_parameter: Float,
    normalize: bool,
}

#[derive(Debug, Clone, Copy)]
pub enum RBFType {
    /// Gaussian RBF: exp(-epsilon * r^2)
    Gaussian,
    /// Multiquadric RBF: sqrt(1 + epsilon * r^2)
    Multiquadric,
    /// Inverse Multiquadric RBF: 1 / sqrt(1 + epsilon * r^2)
    InverseMultiquadric,
    /// Thin Plate Spline RBF: r^2 * log(r)
    ThinPlateSpline,
    /// Linear RBF: r
    Linear,
    /// Cubic RBF: r^3
    Cubic,
    /// Quintic RBF: r^5
    Quintic,
}

#[allow(non_snake_case)] // X follows sklearn/math convention for feature matrix
impl RadialBasisFunctions {
    /// Create a new RadialBasisFunctions transformer
    pub fn new() -> Self {
        Self {
            n_centers: 10,
            rbf_type: RBFType::Gaussian,
            centers: None,
            shape_parameter: 1.0,
            normalize: false,
        }
    }

    /// Set the number of RBF centers
    pub fn n_centers(mut self, n_centers: usize) -> Self {
        self.n_centers = n_centers;
        self
    }

    /// Set the type of radial basis function
    pub fn rbf_type(mut self, rbf_type: RBFType) -> Self {
        self.rbf_type = rbf_type;
        self
    }

    /// Set custom RBF centers
    pub fn centers(mut self, centers: Array2<Float>) -> Self {
        self.centers = Some(centers);
        self
    }

    /// Set the shape parameter (epsilon)
    pub fn shape_parameter(mut self, shape_parameter: Float) -> Self {
        self.shape_parameter = shape_parameter;
        self
    }

    /// Set whether to normalize output features
    pub fn normalize(mut self, normalize: bool) -> Self {
        self.normalize = normalize;
        self
    }

    /// Transform input data using radial basis functions
    pub fn transform(&self, X: &ArrayView2<Float>) -> SklResult<Array2<Float>> {
        let (n_samples, _n_features) = X.dim();

        // Generate centers if not provided
        let centers = match &self.centers {
            Some(centers) => centers.clone(),
            None => self.generate_centers(X)?,
        };

        let n_centers = centers.nrows();
        let mut rbf_features = Array2::zeros((n_samples, n_centers));

        // Compute RBF features for each sample
        for (sample_idx, sample) in X.axis_iter(Axis(0)).enumerate() {
            for (center_idx, center) in centers.axis_iter(Axis(0)).enumerate() {
                let distance = self.compute_distance(&sample, &center);
                let rbf_value = self.evaluate_rbf(distance);
                rbf_features[[sample_idx, center_idx]] = rbf_value;
            }
        }

        // Apply normalization if requested
        if self.normalize {
            self.normalize_features(&mut rbf_features);
        }

        Ok(rbf_features)
    }

    fn generate_centers(&self, X: &ArrayView2<Float>) -> SklResult<Array2<Float>> {
        let (n_samples, n_features) = X.dim();

        if self.n_centers > n_samples {
            return Err(SklearsError::InvalidInput(
                "Number of centers cannot exceed number of samples".to_string(),
            ));
        }

        // Use k-means style center selection (simplified)
        let mut centers = Array2::zeros((self.n_centers, n_features));

        // Initialize first center randomly (use first sample)
        if n_samples > 0 {
            for j in 0..n_features {
                centers[[0, j]] = X[[0, j]];
            }
        }

        // Select remaining centers using farthest-first traversal
        for center_idx in 1..self.n_centers {
            let mut best_sample_idx = 0;
            let mut max_min_distance = 0.0;

            for sample_idx in 0..n_samples {
                let sample = X.row(sample_idx);
                let mut min_distance = Float::INFINITY;

                // Find minimum distance to existing centers
                for existing_center_idx in 0..center_idx {
                    let center = centers.row(existing_center_idx);
                    let distance = self.compute_distance(&sample, &center);
                    min_distance = min_distance.min(distance);
                }

                // Select sample with maximum minimum distance
                if min_distance > max_min_distance {
                    max_min_distance = min_distance;
                    best_sample_idx = sample_idx;
                }
            }

            // Set the new center
            for j in 0..n_features {
                centers[[center_idx, j]] = X[[best_sample_idx, j]];
            }
        }

        Ok(centers)
    }

    fn compute_distance(&self, point1: &ArrayView1<Float>, point2: &ArrayView1<Float>) -> Float {
        // Euclidean distance
        let mut sum_squared = 0.0;
        for (x1, x2) in point1.iter().zip(point2.iter()) {
            sum_squared += (x1 - x2).powi(2);
        }
        sum_squared.sqrt()
    }

    fn evaluate_rbf(&self, distance: Float) -> Float {
        let r = distance;
        let epsilon = self.shape_parameter;

        match self.rbf_type {
            RBFType::Gaussian => (-epsilon * r * r).exp(),
            RBFType::Multiquadric => (1.0 + epsilon * r * r).sqrt(),
            RBFType::InverseMultiquadric => 1.0 / (1.0 + epsilon * r * r).sqrt(),
            RBFType::ThinPlateSpline => {
                if r < 1e-10 {
                    0.0
                } else {
                    r * r * r.ln()
                }
            }
            RBFType::Linear => r,
            RBFType::Cubic => r.powi(3),
            RBFType::Quintic => r.powi(5),
        }
    }

    fn normalize_features(&self, features: &mut Array2<Float>) {
        let (n_samples, n_features) = features.dim();

        for j in 0..n_features {
            let mut column_sum = 0.0;
            for i in 0..n_samples {
                column_sum += features[[i, j]];
            }

            if column_sum > 1e-10 {
                for i in 0..n_samples {
                    features[[i, j]] /= column_sum;
                }
            }
        }
    }
}

impl Default for RadialBasisFunctions {
    fn default() -> Self {
        Self::new()
    }
}

#[allow(non_snake_case)] // X follows sklearn/math convention for feature matrix
impl Transform<ArrayView2<'_, Float>, Array2<Float>> for RadialBasisFunctions {
    fn transform(&self, X: &ArrayView2<'_, Float>) -> SklResult<Array2<Float>> {
        self.transform(X)
    }
}