single_rust 0.5.8

Single-cell analysis in Rust
Documentation 
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name: CI

on:
  push:
    branches: [ main, dev-feature-qc-improvement ]
  pull_request:
    branches: [ main ]

env:
  CARGO_TERM_COLOR: always

jobs:
  test:
    name: Test Suite
    runs-on: ubuntu-latest
    
    steps:
    - uses: actions/checkout@v4
    
    - name: Install Rust
      uses: dtolnay/rust-toolchain@stable
    
    - name: Cache dependencies
      uses: actions/cache@v3
      with:
        path: |
          ~/.cargo/registry
          ~/.cargo/git
          target
        key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }}
    
    - name: Install system dependencies
      run: |
        sudo apt-get update
        sudo apt-get install -y libhdf5-dev pkg-config
    
    - name: Run differential expression tests
      run: cargo test memory::processing::diffexp --verbose
    
    #- name: Run all library tests
    #  run: cargo test --lib --verbose
    
    #- name: Run integration tests
    #  run: cargo test --test test_basic_load --verbose
    
    #- name: Run stats tests
    #  run: cargo test --test test_basic_stats --verbose

  lint:
    name: Rust Lint
    runs-on: ubuntu-latest
    
    steps:
    - uses: actions/checkout@v4
    
    - name: Install Rust
      uses: dtolnay/rust-toolchain@stable
      with:
        components: rustfmt, clippy
    
    - name: Cache dependencies
      uses: actions/cache@v3
      with:
        path: |
          ~/.cargo/registry
          ~/.cargo/git
          target
        key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }}
    
    - name: Install system dependencies
      run: |
        sudo apt-get update
        sudo apt-get install -y libhdf5-dev pkg-config
    
    - name: Check formatting
      run: cargo fmt --all -- --check
    
    - name: Run Clippy
      run: cargo clippy --all-targets --all-features -- -D warnings

  build:
    name: Build Check
    runs-on: ubuntu-latest
    
    steps:
    - uses: actions/checkout@v4
    
    - name: Install Rust
      uses: dtolnay/rust-toolchain@stable
    
    - name: Cache dependencies
      uses: actions/cache@v3
      with:
        path: |
          ~/.cargo/registry
          ~/.cargo/git
          target
        key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }}
    
    - name: Install system dependencies
      run: |
        sudo apt-get update
        sudo apt-get install -y libhdf5-dev pkg-config
    
    - name: Build in debug mode
      run: cargo build --verbose
    
    - name: Build in release mode
      run: cargo build --release --verbose