simdna 1.0.2

High-performance SIMD-accelerated DNA sequence encoding supporting all IUPAC nucleotide codes
Documentation 
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name: Rust CI

on:
  push:
    branches: [main, dev]
  pull_request:
    branches: [main, dev]
  workflow_dispatch:
    inputs:
      run_release_build:
        description: "Run release build job"
        required: false
        type: boolean
        default: false

env:
  CARGO_TERM_COLOR: always

jobs:
  test:
    name: Test on ${{ matrix.os }} (${{ matrix.arch }})
    runs-on: ${{ matrix.runner }}
    strategy:
      fail-fast: false
      matrix:
        include:
          # macOS ARM64 (Apple Silicon)
          - os: macos
            arch: aarch64
            runner: macos-14
            target: aarch64-apple-darwin

          # Linux x86_64
          - os: linux
            arch: x86_64
            runner: ubuntu-latest
            target: x86_64-unknown-linux-gnu

          # Linux ARM64 (native ARM runner)
          - os: linux
            arch: aarch64
            runner: ubuntu-24.04-arm
            target: aarch64-unknown-linux-gnu

    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@stable
        with:
          targets: ${{ matrix.target }}

      - name: Cache cargo registry
        uses: actions/cache@v4
        with:
          path: ~/.cargo/registry
          key: ${{ runner.os }}-${{ matrix.arch }}-cargo-registry-${{ hashFiles('**/Cargo.lock') }}

      - name: Cache cargo index
        uses: actions/cache@v4
        with:
          path: ~/.cargo/git
          key: ${{ runner.os }}-${{ matrix.arch }}-cargo-git-${{ hashFiles('**/Cargo.lock') }}

      - name: Cache cargo build
        uses: actions/cache@v4
        with:
          path: target
          key: ${{ runner.os }}-${{ matrix.arch }}-cargo-build-${{ hashFiles('**/Cargo.lock') }}

      - name: Check formatting
        run: cargo fmt -- --check

      - name: Run clippy
        run: cargo clippy --target ${{ matrix.target }} -- -D warnings

      - name: Build
        run: cargo build --target ${{ matrix.target }} --verbose

      - name: Run tests
        run: cargo test --target ${{ matrix.target }} --verbose

      - name: Run doc tests
        run: cargo test --target ${{ matrix.target }} --doc --verbose

  # Optional: Build release binaries
  build-release:
    name: Build release on ${{ matrix.os }} (${{ matrix.arch }})
    runs-on: ${{ matrix.runner }}
    needs: test
    if: github.event_name == 'workflow_dispatch' && github.event.inputs.run_release_build == 'true'
    strategy:
      matrix:
        include:
          - os: macos
            arch: aarch64
            runner: macos-14
            target: aarch64-apple-darwin

          - os: linux
            arch: x86_64
            runner: ubuntu-latest
            target: x86_64-unknown-linux-gnu

          - os: linux
            arch: aarch64
            runner: ubuntu-24.04-arm
            target: aarch64-unknown-linux-gnu

    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@stable
        with:
          targets: ${{ matrix.target }}

      - name: Build release
        run: cargo build --target ${{ matrix.target }} --release --verbose

      - name: Upload artifacts
        uses: actions/upload-artifact@v4
        with:
          name: binary-${{ matrix.os }}-${{ matrix.arch }}
          path: target/${{ matrix.target }}/release/*
          if-no-files-found: warn