seqwish 0.1.3

A variation graph inducer - build pangenome graphs from pairwise alignments
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.70"
name = "seqwish"
version = "0.1.3"
authors = ["Erik Garrison <erik.garrison@gmail.com>"]
build = "build.rs"
exclude = [
    "test/*",
    "data/*",
    "cpp/*",
    "deps/**/*",
    "scripts/*",
    "examples/*",
    "*.pdf",
    "*.md",
    "!README.md",
    ".github/*",
    ".claude/*",
    "Dockerfile",
    "*.log",
    "benchmark_*.log",
    "target/**/*",
    "SEQINDEX_ANALYSIS_FINAL_REPORT.txt",
    ".gitmodules",
    ".gitignore",
    "default.nix",
    "seqwish.nix",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A variation graph inducer - build pangenome graphs from pairwise alignments"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "pangenome",
    "variation-graph",
    "gfa",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/pangenome/seqwish"

[lib]
name = "seqwish"
crate-type = [
    "rlib",
    "staticlib",
    "cdylib",
]
path = "src/lib.rs"

[[bin]]
name = "seqwish"
path = "src/main.rs"

[[test]]
name = "integration_test"
path = "tests/integration_test.rs"

[dependencies.bitvec]
version = "1.0"
features = ["atomic"]

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.crossbeam-queue]
version = "0.3"

[dependencies.flate2]
version = "1.0"

[dependencies.fm-index]
version = "0.3"

[dependencies.iitree-rs]
version = "0.1.1"

[dependencies.libc]
version = "0.2"

[dependencies.memmap2]
version = "0.9"

[dependencies.once_cell]
version = "1.21"

[dependencies.parking_lot]
version = "0.12"

[dependencies.portable-atomic]
version = "1.9"

[dependencies.rayon]
version = "1.11"

[dependencies.rdst]
version = "0.20"

[dependencies.sucds]
version = "0.8"

[dependencies.uf_rush]
version = "0.1"

[dependencies.vers-vecs]
version = "1.1"
features = ["simd"]

[build-dependencies.cbindgen]
version = "0.27"