sequintools 0.5.3

A suite of tools for manipulating and reporting on NGS data that has sequins added to the sample.
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79

# Changelog

## [0.5.3](https://github.com/sequinsbio/sequintools/compare/v0.5.2...v0.5.3) (2025-03-11)


### Bug Fixes

* **deps:** bump anyhow from 1.0.96 to 1.0.97 ([#166](https://github.com/sequinsbio/sequintools/issues/166)) ([6f88668](https://github.com/sequinsbio/sequintools/commit/6f88668efe0d227647789dd661e73521c3191193))
* **deps:** bump clap from 4.5.30 to 4.5.31 ([#165](https://github.com/sequinsbio/sequintools/issues/165)) ([b7af107](https://github.com/sequinsbio/sequintools/commit/b7af1078b4949386c9a145bc6a0f3df45e08ac20))
* **deps:** bump tempfile from 3.17.1 to 3.18.0 ([#170](https://github.com/sequinsbio/sequintools/issues/170)) ([d583d43](https://github.com/sequinsbio/sequintools/commit/d583d4330932a129b01470495776c36c2b545d7d))
* keep sample reads when calibrating ([#169](https://github.com/sequinsbio/sequintools/issues/169)) ([2e3023b](https://github.com/sequinsbio/sequintools/commit/2e3023b1c439c5bff5440e85997fbe0f92f37bf7))

## [0.5.2](https://github.com/sequinsbio/sequintools/compare/v0.5.1...v0.5.2) (2025-02-24)


### Bug Fixes

* **deps:** bump anyhow from 1.0.95 to 1.0.96 ([#162](https://github.com/sequinsbio/sequintools/issues/162)) ([89f60f5](https://github.com/sequinsbio/sequintools/commit/89f60f5376e006c9ad7c77464c14de6b0eb2437c))
* **deps:** bump clap from 4.5.28 to 4.5.29 ([#159](https://github.com/sequinsbio/sequintools/issues/159)) ([fbeb232](https://github.com/sequinsbio/sequintools/commit/fbeb23259072b935a70548e17c5eb4ed8d20613f))
* **deps:** bump clap from 4.5.29 to 4.5.30 ([#161](https://github.com/sequinsbio/sequintools/issues/161)) ([ffa5ef7](https://github.com/sequinsbio/sequintools/commit/ffa5ef7676d4a5b4d2ef88c6ee8f653189607f66))
* **deps:** bump tempfile from 3.16.0 to 3.17.0 ([#158](https://github.com/sequinsbio/sequintools/issues/158)) ([aeaba36](https://github.com/sequinsbio/sequintools/commit/aeaba36311ff1ae4615212caeddbe48af7e127e8))
* **deps:** bump tempfile from 3.17.0 to 3.17.1 ([#163](https://github.com/sequinsbio/sequintools/issues/163)) ([cf841bc](https://github.com/sequinsbio/sequintools/commit/cf841bc7bc6e3b4abf85c05c70d5e1b3d8f65db4))

## [0.5.1](https://github.com/sequinsbio/sequintools/compare/v0.5.0...v0.5.1) (2025-02-10)


### Bug Fixes

* **deps:** bump clap from 4.5.27 to 4.5.28 ([#155](https://github.com/sequinsbio/sequintools/issues/155)) ([af87f1c](https://github.com/sequinsbio/sequintools/commit/af87f1ce6622916129b552873aa32e21ddf26d27))
* **deps:** bump tempfile from 3.14.0 to 3.16.0 ([#149](https://github.com/sequinsbio/sequintools/issues/149)) ([8db866f](https://github.com/sequinsbio/sequintools/commit/8db866f1aeafcbfc2b588bcb290aceaee96da012))
* do not apply a depth limit when calculating mean in calibrate ([#154](https://github.com/sequinsbio/sequintools/issues/154)) ([a6cc8a8](https://github.com/sequinsbio/sequintools/commit/a6cc8a85f92b53ac2ede2d0c1c32f56dbc07fbc7))
* uprev random dependencies ([#152](https://github.com/sequinsbio/sequintools/issues/152)) ([fc3a948](https://github.com/sequinsbio/sequintools/commit/fc3a9489f1f59022b44183ec2c0b04f12f8aa41d))

## [0.5.0](https://github.com/sequinsbio/sequintools/compare/v0.4.0...v0.5.0) (2025-01-31)


### Features

* interpret bedcov max depth 0 as no limit ([#147](https://github.com/sequinsbio/sequintools/issues/147)) ([ddbe085](https://github.com/sequinsbio/sequintools/commit/ddbe085f45cb3181d33d93b6735ee0030682ef9d))

## [0.4.0](https://github.com/sequinsbio/sequintools/compare/v0.3.3...v0.4.0) (2025-01-30)


### Features

* allow setting max depth for bedcov ([#140](https://github.com/sequinsbio/sequintools/issues/140)) ([092e602](https://github.com/sequinsbio/sequintools/commit/092e602fc1b7227dd0396395d055ccf5241ef45c)), closes [#139](https://github.com/sequinsbio/sequintools/issues/139)

## [0.3.3](https://github.com/sequinsbio/sequintools/compare/v0.3.2...v0.3.3) (2025-01-21)


### Features

* allow docker image to be used by nextflow ([#130](https://github.com/sequinsbio/sequintools/issues/130)) ([2b2ab12](https://github.com/sequinsbio/sequintools/commit/2b2ab12017f456b176d98abb878843e89c3f620d)), closes [#129](https://github.com/sequinsbio/sequintools/issues/129)


### Bug Fixes

* **deps:** bump clap from 4.5.23 to 4.5.26 ([#127](https://github.com/sequinsbio/sequintools/issues/127)) ([8711063](https://github.com/sequinsbio/sequintools/commit/8711063d708dd2ed4aef3b2d85774e37d7720f40))

## [0.3.2](https://github.com/sequinsbio/sequintools/compare/v0.3.1...v0.3.2) (2024-12-24)


### Bug Fixes

* do not include component in the release tag ([#122](https://github.com/sequinsbio/sequintools/issues/122)) ([d1a2bd0](https://github.com/sequinsbio/sequintools/commit/d1a2bd05eb3b2e0b5412ee667a9690decfca0cb1))

## [0.3.1](https://github.com/sequinsbio/sequintools/compare/sequintools-v0.3.0...sequintools-v0.3.1) (2024-12-24)


### Bug Fixes

* minimize IO operations within loop ([#114](https://github.com/sequinsbio/sequintools/issues/114)) ([810e2b6](https://github.com/sequinsbio/sequintools/commit/810e2b6fae347144b303b7dd22b742a7d08c9f5d))

## Changelog

All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).