seqtui 0.1.1

Fast TUI toolkit for viewing, translating, and manipulating biological sequences.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145

name: Release (SeqTUI)

on:
  workflow_dispatch:
  push:
    tags:
      - "v*"

permissions:
  contents: write

jobs:
  build:
    name: Build ${{ matrix.platform.label }}
    strategy:
      fail-fast: true
      matrix:
        platform:
          # Linux (x86_64)
          - label: Linux (x86_64)
            runs-on: ubuntu-24.04
            target: x86_64-unknown-linux-gnu
            archive: seqtui-${{ github.ref_name }}-linux-x86_64

          # Linux (x86_64 - musl, static)
          - label: Linux (x86_64 - musl)
            runs-on: ubuntu-24.04
            target: x86_64-unknown-linux-musl
            archive: seqtui-${{ github.ref_name }}-linux-x86_64-musl

          # macOS (Apple Silicon)
          - label: macOS (Apple Silicon)
            runs-on: macos-15
            target: aarch64-apple-darwin
            archive: seqtui-${{ github.ref_name }}-macos-apple-silicon

          # macOS (Intel)
          - label: macOS (Intel)
            runs-on: macos-15-intel
            target: x86_64-apple-darwin
            archive: seqtui-${{ github.ref_name }}-macos-intel

          # Windows (x86_64)
          - label: Windows (x86_64)
            runs-on: windows-latest
            target: x86_64-pc-windows-msvc
            archive: seqtui-${{ github.ref_name }}-windows-x86_64

    runs-on: ${{ matrix.platform.runs-on }}

    steps:
      - uses: actions/checkout@v4

      - name: Build
        uses: houseabsolute/actions-rust-cross@v1
        with:
          command: build
          target: ${{ matrix.platform.target }}
          args: "--locked --release"
          strip: true

      - name: Create archive (Unix)
        if: runner.os != 'Windows'
        shell: bash
        run: |
          set -euxo pipefail
          
          BIN_NAME="seqtui"
          ARCHIVE_NAME="${{ matrix.platform.archive }}"
          
          # Create temporary directory for archive contents
          mkdir -p "${ARCHIVE_NAME}"
          
          # Copy binary
          cp "target/${{ matrix.platform.target }}/release/${BIN_NAME}" "${ARCHIVE_NAME}/"
          
          # Copy example files
          mkdir -p "${ARCHIVE_NAME}/examples"
          cp examples/LOC_01790.nex "${ARCHIVE_NAME}/examples/"
          cp examples/LOC_11070.fasta "${ARCHIVE_NAME}/examples/"
          cp examples/LOC_39310.fasta "${ARCHIVE_NAME}/examples/"
          cp examples/alignment.fasta "${ARCHIVE_NAME}/examples/"
          
          # Create archive
          tar czf "${ARCHIVE_NAME}.tar.gz" "${ARCHIVE_NAME}"
          echo "ASSET=${ARCHIVE_NAME}.tar.gz" >> $GITHUB_ENV

      - name: Create archive (Windows)
        if: runner.os == 'Windows'
        shell: pwsh
        run: |
          $BIN_NAME = "seqtui.exe"
          $ARCHIVE_NAME = "${{ matrix.platform.archive }}"
          $TARGET = "${{ matrix.platform.target }}"
          
          # Create temporary directory for archive contents
          New-Item -ItemType Directory -Path "$ARCHIVE_NAME" -Force | Out-Null
          
          # Copy binary
          $binPath = Join-Path "target" $TARGET "release" $BIN_NAME
          Copy-Item $binPath "$ARCHIVE_NAME\"
          
          # Copy example files
          New-Item -ItemType Directory -Path "$ARCHIVE_NAME\examples" -Force | Out-Null
          Copy-Item "examples\LOC_01790.nex" "$ARCHIVE_NAME\examples\"
          Copy-Item "examples\LOC_11070.fasta" "$ARCHIVE_NAME\examples\"
          Copy-Item "examples\LOC_39310.fasta" "$ARCHIVE_NAME\examples\"
          Copy-Item "examples\alignment.fasta" "$ARCHIVE_NAME\examples\"
          
          # Create archive
          Compress-Archive -Path "$ARCHIVE_NAME" -DestinationPath "$ARCHIVE_NAME.zip"
          echo "ASSET=$ARCHIVE_NAME.zip" | Out-File -FilePath $env:GITHUB_ENV -Append

      - name: Upload artifact
        uses: actions/upload-artifact@v4
        with:
          name: ${{ matrix.platform.archive }}
          path: ${{ env.ASSET }}
          if-no-files-found: error

  release:
    name: Create Release
    needs: build
    runs-on: ubuntu-latest
    if: startsWith(github.ref, 'refs/tags/')
    
    steps:
      - uses: actions/checkout@v4

      - name: Download all artifacts
        uses: actions/download-artifact@v4
        with:
          path: artifacts

      - name: Display structure of downloaded files
        run: ls -R artifacts

      - name: Create GitHub Release
        uses: softprops/action-gh-release@v2
        with:
          files: artifacts/**/*
          draft: false
          prerelease: false
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}