seqtkrs 0.1.1

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[package]
edition = "2021"
rust-version = "1.80"
name = "seqtkrs"
version = "0.1.1"
authors = ["seqtkrs contributors"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A Rust reimplementation of seqtk, a fast and lightweight tool for processing biological sequences in FASTA/FASTQ format"
homepage = "https://github.com/sheny-bio/seqtkrs.git"
documentation = "https://github.com/sheny-bio/seqtkrs.git"
readme = "README.md"
keywords = [
    "bioinformatics",
    "fasta",
    "fastq",
    "sequence",
    "genomics",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/sheny-bio/seqtkrs.git"

[lib]
name = "seqtkrs"
path = "src/lib.rs"

[[bin]]
name = "seqtkrs"
path = "src/main.rs"

[[test]]
name = "integration_comp"
path = "tests/integration_comp.rs"

[[test]]
name = "integration_cutn"
path = "tests/integration_cutn.rs"

[[test]]
name = "integration_dropse"
path = "tests/integration_dropse.rs"

[[test]]
name = "integration_famask"
path = "tests/integration_famask.rs"

[[test]]
name = "integration_fqchk"
path = "tests/integration_fqchk.rs"

[[test]]
name = "integration_gap"
path = "tests/integration_gap.rs"

[[test]]
name = "integration_gc"
path = "tests/integration_gc.rs"

[[test]]
name = "integration_hety"
path = "tests/integration_hety.rs"

[[test]]
name = "integration_hpc"
path = "tests/integration_hpc.rs"

[[test]]
name = "integration_hrun"
path = "tests/integration_hrun.rs"

[[test]]
name = "integration_kfreq"
path = "tests/integration_kfreq.rs"

[[test]]
name = "integration_listhet"
path = "tests/integration_listhet.rs"

[[test]]
name = "integration_mergefa"
path = "tests/integration_mergefa.rs"

[[test]]
name = "integration_mergepe"
path = "tests/integration_mergepe.rs"

[[test]]
name = "integration_mutfa"
path = "tests/integration_mutfa.rs"

[[test]]
name = "integration_randbase"
path = "tests/integration_randbase.rs"

[[test]]
name = "integration_rename"
path = "tests/integration_rename.rs"

[[test]]
name = "integration_sample"
path = "tests/integration_sample.rs"

[[test]]
name = "integration_seq"
path = "tests/integration_seq.rs"

[[test]]
name = "integration_size"
path = "tests/integration_size.rs"

[[test]]
name = "integration_split"
path = "tests/integration_split.rs"

[[test]]
name = "integration_subseq"
path = "tests/integration_subseq.rs"

[[test]]
name = "integration_telo"
path = "tests/integration_telo.rs"

[[test]]
name = "integration_trimfq"
path = "tests/integration_trimfq.rs"

[[test]]
name = "test_algorithms"
path = "tests/test_algorithms.rs"

[[test]]
name = "test_commands"
path = "tests/test_commands.rs"

[dependencies.anyhow]
version = "1.0.100"

[dependencies.bstr]
version = "1.12.1"

[dependencies.bzip2]
version = "0.6.1"

[dependencies.clap]
version = "4.5.54"
features = [
    "derive",
    "cargo",
]

[dependencies.flate2]
version = "1.1.8"

[dependencies.memchr]
version = "2.7.6"

[dependencies.rand]
version = "0.9.2"

[dependencies.rand_mt]
version = "5.0.0"

[dependencies.rayon]
version = "1.11.0"

[dependencies.rustc-hash]
version = "2.1.1"

[dependencies.thiserror]
version = "2.0.18"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.criterion]
version = "0.8.1"

[dev-dependencies.predicates]
version = "3.1"

[dev-dependencies.proptest]
version = "1.9.0"

[dev-dependencies.tempfile]
version = "3.24.0"