seqtable 0.2.0

High-performance FASTQ sequence counter
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "seqtable"
version = "0.2.0"
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "High-performance FASTQ sequence counter"
readme = "README.md"
keywords = [
    "bioinformatics",
    "fastq",
    "sequence",
    "counting",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/mulatta/seqtable"

[features]
cli = [
    "dep:clap",
    "dep:indicatif",
    "dep:console",
    "dep:arrow",
    "dep:parquet",
    "dep:csv",
]
default = ["cli"]

[lib]
name = "seqtable"
path = "src/lib.rs"

[[bin]]
name = "seqtable"
path = "src/main.rs"
required-features = ["cli"]

[[example]]
name = "generate_fixtures"
path = "examples/generate_fixtures.rs"

[[test]]
name = "heap_profile"
path = "tests/heap_profile.rs"

[[test]]
name = "integration_test"
path = "tests/integration_test.rs"

[[bench]]
name = "seqtable_bench"
path = "benches/seqtable_bench.rs"
harness = false
required-features = ["cli"]

[dependencies.ahash]
version = "0.8"

[dependencies.anyhow]
version = "1.0"

[dependencies.arrow]
version = "53.0"
optional = true

[dependencies.clap]
version = "4.5"
features = ["derive"]
optional = true

[dependencies.console]
version = "0.15"
optional = true

[dependencies.csv]
version = "1.4.0"
optional = true

[dependencies.flate2]
version = "1.0"
features = ["zlib-ng"]
default-features = false

[dependencies.indicatif]
version = "0.17"
optional = true

[dependencies.needletail]
version = "0.5"

[dependencies.parquet]
version = "53.0"
optional = true

[dependencies.rayon]
version = "1.8"

[dev-dependencies.criterion]
version = "0.8"
features = ["html_reports"]

[dev-dependencies.dhat]
version = "0.3"

[dev-dependencies.tempfile]
version = "3"

[profile.bench]
strip = false

[profile.dev]
opt-level = 1
debug = 2
incremental = true

[profile.profiling]
debug = 1
inherits = "release"
strip = false

[profile.release]
lto = "fat"
codegen-units = 1
panic = "abort"
strip = true