Function seq_geom_xform::xform_read_pairs_to_file
source · pub fn xform_read_pairs_to_file(
geo_re: FragmentRegexDesc,
r1: &[PathBuf],
r2: &[PathBuf],
r1_ofile: PathBuf,
r2_ofile: PathBuf
) -> Result<XformStats>
Expand description
Given input file paths (possibly multiple sets of files) in r1
and r2
,
read sequence records from these files and transform them in accordance with
the FragmentRegexDesc
provided as geo_re
. The transformed records are then
written out to r1_ofile
and r2_ofile
. Currently all output is written in FASTA
format, so any quality lines or comment lines (if the input is FASTQ
) will be
dropped.