Struct seq_geom_xform::FragmentRegexDesc

pub struct FragmentRegexDesc {
    pub r1_cginfo: Vec<GeomPiece>,
    pub r2_cginfo: Vec<GeomPiece>,
    pub r1_re: Regex,
    pub r2_re: Regex,
    /* private fields */
}

Fields

r1_cginfo: Vec<GeomPiece>

r2_cginfo: Vec<GeomPiece>

r1_re: Regex

The regular expression expected to match read 1

r2_re: Regex

The regular expression expected to match read 1

Implementations

impl FragmentRegexDesc

pub fn parse_into(&mut self, r1: &[u8], r2: &[u8], sp: &mut SeqPair) -> bool

Parses the read pair r1 and r2 in accordance with the geometry specified in self. The resulting parse, if successful, is placed into the output sp. This function returns true if the entire pair of reads was parsed succesfully, and false otherwise. If the parse is not successful, nothing can be assumed about the contents of sp.

pub fn get_simplified_geo_desc(&self) -> FragmentGeomDesc

pub fn get_simplified_description_string(&self) -> String

Trait Implementations

impl Debug for FragmentRegexDesc

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.