semsimian_server 0.2.4

A server for SemSimian, a semantic similarity service for biomedical ontologies
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46

name: Test SemSimian Server
on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

jobs:
  test:
    name: Run cargo tests
    runs-on: ubuntu-latest
    steps:
      - name: Checkout
        uses: actions/checkout@v5

      # Install/Update Rust toolchain
      - name: Check versions
        run: |
          rustup --version
          rustup update
          rustup --version
          cargo --version
          rustc --version
          rustup show

      - name: Download Phenio
        run: |
          mkdir -p ~/.data/oaklib
          wget https://data.monarchinitiative.org/monarch-kg/latest/phenio.db.gz -O ~/.data/oaklib/phenio.db.gz
          gunzip ~/.data/oaklib/phenio.db.gz

      - name: Run Tests
        run: |
          cargo test test_compare -- --nocapture
          cargo test test_search -- --nocapture

  build-docker:
    name: Test Building Docker Image
    runs-on: ubuntu-latest
    # skip on pushes to main
    if: github.ref != 'refs/heads/main'
    steps:
      - name: Build Docker image
        uses: docker/build-push-action@v6
        with:
          push: false