segul-core 0.24.0

An ultrafast and memory-efficient tool for phylogenomics
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "segul-core"
version = "0.24.0"
authors = ["Heru Handika <herubiolog@gmail.com>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "An ultrafast and memory-efficient tool for phylogenomics"
homepage = "https://www.segul.app/"
readme = "README.md"
keywords = [
    "alignment",
    "genomics",
    "phylogenomics",
    "bioinformatics",
]
categories = ["science"]
license = "MIT"
repository = "https://github.com/hhandika/segul"

[package.metadata.docs.rs]
all-features = true
rustdoc-args = [
    "--cfg",
    "docsrs",
]

[features]
align = []
contig = []
default = [
    "align",
    "sequence",
    "read",
    "contig",
    "maf",
]
maf = []
read = [
    "dep:noodles",
    "noodles/fastq",
]
sequence = []

[lib]
name = "segul_core"
path = "src/lib.rs"

[dependencies.ahash]
version = "0.8.*"

[dependencies.alphanumeric-sort]
version = "1.5.8"

[dependencies.anyhow]
version = "1.0.*"

[dependencies.assert_approx_eq]
version = "1.1.0"

[dependencies.bytecount]
version = "0.6.*"

[dependencies.chrono]
version = "0.4.*"

[dependencies.colored]
version = "3.1.*"

[dependencies.csv]
version = "1.4.0"

[dependencies.flate2]
version = "1.1.10"

[dependencies.glob]
version = "0.3.*"

[dependencies.indexmap]
version = "2.*"

[dependencies.indicatif]
version = "0.18.*"

[dependencies.lazy_static]
version = "1.*"

[dependencies.log]
version = "0.*"

[dependencies.log4rs]
version = "1.*"

[dependencies.nom]
version = "8.*"

[dependencies.noodles]
version = "0.118.*"
optional = true

[dependencies.num-format]
version = "0.*"

[dependencies.rayon]
version = "1.*"

[dependencies.regex]
version = "1.*"

[dependencies.serde]
version = "1.0.229"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.154"

[dependencies.walkdir]
version = "2.5.0"

[dependencies.zip]
version = "9.0.5"
features = ["deflate"]
default-features = false

[dev-dependencies.tempfile]
version = "3.27.0"

[lints.rust.unexpected_cfgs]
level = "warn"
priority = 0
check-cfg = [
    "cfg(tarpaulin_include)",
    "cfg(docsrs)",
]