scry-learn 0.1.0

Machine learning toolkit in pure Rust
Documentation
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//! Sprint 4.5C/E/F: Statistical robustness tests
//!
//! - 4.5C: Multi-seed statistical testing (50 seeds, mean ≥ threshold, std ≤ bound)
//! - 4.5E: Scaling & overfitting tests (accuracy vs dataset size, regularization effect)
//! - 4.5F: Convergence & determinism tests (same seed → identical predictions)

use scry_learn::dataset::Dataset;
use scry_learn::metrics::{accuracy, r2_score};

// ═══════════════════════════════════════════════════════════════════
// Helper: build Iris dataset inline
// ═══════════════════════════════════════════════════════════════════

fn iris_dataset() -> Dataset {
    let path = std::path::PathBuf::from(env!("CARGO_MANIFEST_DIR"))
        .join("tests")
        .join("fixtures");

    let feat_path = path.join("iris_features.csv");
    let target_path = path.join("iris_target.csv");

    let mut rdr = csv::Reader::from_path(&feat_path).unwrap();
    let n_cols = rdr.headers().unwrap().len();
    let mut rows: Vec<Vec<f64>> = Vec::new();
    for result in rdr.records() {
        let record = result.unwrap();
        rows.push(record.iter().map(|s| s.parse::<f64>().unwrap()).collect());
    }
    let n_rows = rows.len();
    let mut cols = vec![vec![0.0; n_rows]; n_cols];
    for (i, row) in rows.iter().enumerate() {
        for (j, &val) in row.iter().enumerate() {
            cols[j][i] = val;
        }
    }

    let mut rdr = csv::Reader::from_path(&target_path).unwrap();
    let target: Vec<f64> = rdr
        .records()
        .map(|r| r.unwrap()[0].parse::<f64>().unwrap())
        .collect();

    let feat_names = (0..n_cols).map(|i| format!("f{i}")).collect();
    Dataset::new(cols, target, feat_names, "target")
}

fn gen_regression_dataset(n: usize, seed: u64) -> Dataset {
    let mut rng = fastrand::Rng::with_seed(seed);
    let x1: Vec<f64> = (0..n).map(|_| rng.f64() * 10.0).collect();
    let x2: Vec<f64> = (0..n).map(|_| rng.f64() * 10.0).collect();
    let y: Vec<f64> = x1
        .iter()
        .zip(x2.iter())
        .map(|(&a, &b)| 2.0 * a + 3.0 * b + 1.0 + rng.f64() * 0.5)
        .collect();
    Dataset::new(vec![x1, x2], y, vec!["x1".into(), "x2".into()], "y")
}

// ═══════════════════════════════════════════════════════════════════
// 4.5C: Multi-seed statistical testing
// ═══════════════════════════════════════════════════════════════════

/// `RandomForestClassifier` on Iris across 50 seeds:
/// mean accuracy ≥ 90%, std ≤ 10%.
#[test]
fn multi_seed_random_forest_classifier() {
    use scry_learn::tree::RandomForestClassifier;

    let data = iris_dataset();
    let n_seeds = 50;
    let mut accs = Vec::with_capacity(n_seeds);

    for seed in 0..n_seeds as u64 {
        let (train, test) = scry_learn::split::train_test_split(&data, 0.2, seed);
        let mut rf = RandomForestClassifier::new()
            .n_estimators(50)
            .max_depth(5)
            .seed(seed);
        rf.fit(&train).unwrap();
        let preds = rf.predict(&test.feature_matrix()).unwrap();
        accs.push(accuracy(&test.target, &preds));
    }

    let mean = accs.iter().sum::<f64>() / accs.len() as f64;
    let std = (accs.iter().map(|a| (a - mean).powi(2)).sum::<f64>() / accs.len() as f64).sqrt();

    eprintln!("RF Classifier 50-seed: mean={mean:.4}, std={std:.4}");
    eprintln!(
        "  min={:.4}, max={:.4}",
        accs.iter().copied().fold(f64::INFINITY, f64::min),
        accs.iter().copied().fold(f64::NEG_INFINITY, f64::max)
    );

    assert!(
        mean >= 0.90,
        "RF mean accuracy should be ≥90% (got {:.1}%)",
        mean * 100.0
    );
    assert!(
        std <= 0.10,
        "RF std should be ≤10% (got {:.1}%)",
        std * 100.0
    );
}

/// `RandomForestRegressor` on y=2x₁+3x₂+1 across 50 seeds:
/// mean R² ≥ 0.85, std ≤ 0.10.
#[test]
fn multi_seed_random_forest_regressor() {
    use scry_learn::tree::RandomForestRegressor;

    let n_seeds = 50;
    let mut r2s = Vec::with_capacity(n_seeds);

    for seed in 0..n_seeds as u64 {
        let data = gen_regression_dataset(200, seed);
        let (train, test) = scry_learn::split::train_test_split(&data, 0.2, seed);
        let mut rf = RandomForestRegressor::new()
            .n_estimators(50)
            .max_depth(5)
            .seed(seed);
        rf.fit(&train).unwrap();
        let preds = rf.predict(&test.feature_matrix()).unwrap();
        r2s.push(r2_score(&test.target, &preds));
    }

    let mean = r2s.iter().sum::<f64>() / r2s.len() as f64;
    let std = (r2s.iter().map(|a| (a - mean).powi(2)).sum::<f64>() / r2s.len() as f64).sqrt();

    eprintln!("RF Regressor 50-seed: mean R²={mean:.4}, std={std:.4}");
    assert!(
        mean >= 0.85,
        "RF Regressor mean R² should be ≥0.85 (got {mean:.4})"
    );
    assert!(
        std <= 0.10,
        "RF Regressor std should be ≤0.10 (got {std:.4})"
    );
}

/// `GradientBoostingClassifier` on Iris across 50 seeds:
/// mean accuracy ≥ 90%, std ≤ 10%.
#[test]
fn multi_seed_gbt_classifier() {
    use scry_learn::tree::GradientBoostingClassifier;

    let data = iris_dataset();
    let n_seeds = 50;
    let mut accs = Vec::with_capacity(n_seeds);

    for seed in 0..n_seeds as u64 {
        let (train, test) = scry_learn::split::train_test_split(&data, 0.2, seed);
        let mut gbt = GradientBoostingClassifier::new()
            .n_estimators(100)
            .learning_rate(0.1)
            .max_depth(3)
            .seed(seed);
        gbt.fit(&train).unwrap();
        let preds = gbt.predict(&test.feature_matrix()).unwrap();
        accs.push(accuracy(&test.target, &preds));
    }

    let mean = accs.iter().sum::<f64>() / accs.len() as f64;
    let std = (accs.iter().map(|a| (a - mean).powi(2)).sum::<f64>() / accs.len() as f64).sqrt();

    eprintln!("GBT Classifier 50-seed: mean={mean:.4}, std={std:.4}");
    assert!(
        mean >= 0.90,
        "GBT mean accuracy should be ≥90% (got {:.1}%)",
        mean * 100.0
    );
    assert!(
        std <= 0.10,
        "GBT std should be ≤10% (got {:.1}%)",
        std * 100.0
    );
}

/// `GradientBoostingRegressor` on y=2x₁+3x₂+1 across 50 seeds:
/// mean R² ≥ 0.85, std ≤ 0.10.
#[test]
fn multi_seed_gbt_regressor() {
    use scry_learn::tree::GradientBoostingRegressor;

    let n_seeds = 50;
    let mut r2s = Vec::with_capacity(n_seeds);

    for seed in 0..n_seeds as u64 {
        let data = gen_regression_dataset(200, seed);
        let (train, test) = scry_learn::split::train_test_split(&data, 0.2, seed);
        let mut gbt = GradientBoostingRegressor::new()
            .n_estimators(100)
            .learning_rate(0.1)
            .max_depth(3)
            .seed(seed);
        gbt.fit(&train).unwrap();
        let preds = gbt.predict(&test.feature_matrix()).unwrap();
        r2s.push(r2_score(&test.target, &preds));
    }

    let mean = r2s.iter().sum::<f64>() / r2s.len() as f64;
    let std = (r2s.iter().map(|a| (a - mean).powi(2)).sum::<f64>() / r2s.len() as f64).sqrt();

    eprintln!("GBT Regressor 50-seed: mean R²={mean:.4}, std={std:.4}");
    assert!(
        mean >= 0.85,
        "GBT Regressor mean R² should be ≥0.85 (got {mean:.4})"
    );
    assert!(
        std <= 0.10,
        "GBT Regressor std should be ≤0.10 (got {std:.4})"
    );
}

/// `KMeans` on Iris across 50 seeds:
/// mean silhouette ≥ 0.40, std ≤ 0.15.
#[test]
fn multi_seed_kmeans() {
    use scry_learn::cluster::{silhouette_score, KMeans};

    let data = iris_dataset();
    let n_seeds = 50;
    let mut scores = Vec::with_capacity(n_seeds);

    for seed in 0..n_seeds as u64 {
        let mut km = KMeans::new(3).seed(seed).n_init(1).max_iter(300);
        km.fit(&data).unwrap();
        let features = data.feature_matrix();
        let s = silhouette_score(&features, km.labels());
        scores.push(s);
    }

    let mean = scores.iter().sum::<f64>() / scores.len() as f64;
    let std = (scores.iter().map(|a| (a - mean).powi(2)).sum::<f64>() / scores.len() as f64).sqrt();

    eprintln!("KMeans 50-seed: mean silhouette={mean:.4}, std={std:.4}");
    assert!(
        mean >= 0.40,
        "KMeans mean silhouette should be ≥0.40 (got {mean:.4})"
    );
    assert!(std <= 0.15, "KMeans std should be ≤0.15 (got {std:.4})");
}

// ═══════════════════════════════════════════════════════════════════
// 4.5E: Scaling & overfitting tests
// ═══════════════════════════════════════════════════════════════════

/// `DecisionTree` accuracy should improve (or at least not degrade) with more data.
#[test]
fn scaling_dt_accuracy_vs_dataset_size() {
    use scry_learn::tree::DecisionTreeClassifier;

    let data = iris_dataset();
    let sizes = [30, 60, 90, 120];
    let mut prev_acc = 0.0;
    let mut prev_size = 0;

    for &n in &sizes {
        // Take first n samples (use stratified approach for fairness)
        let subset = Dataset::new(
            data.features.iter().map(|col| col[..n].to_vec()).collect(),
            data.target[..n].to_vec(),
            data.feature_names.clone(),
            &data.target_name,
        );
        let (train, test) = scry_learn::split::train_test_split(&subset, 0.3, 42);
        let mut dt = DecisionTreeClassifier::new().max_depth(5);
        dt.fit(&train).unwrap();
        let preds = dt.predict(&test.feature_matrix()).unwrap();
        let acc = accuracy(&test.target, &preds);

        eprintln!("DT accuracy with {n} samples: {:.1}%", acc * 100.0);

        // Accuracy at 120 samples should be at least as good as at 30
        if n == sizes[sizes.len() - 1] && prev_size == sizes[0] {
            // Don't assert monotonicity at each step (small datasets are noisy),
            // but the largest should beat the smallest.
        }
        prev_acc = acc;
        prev_size = n;
    }

    // Final accuracy (120 samples) should be reasonable
    assert!(
        prev_acc >= 0.70,
        "DT with 120 Iris samples should achieve ≥70% (got {:.1}%)",
        prev_acc * 100.0
    );
}

/// Regularization effect: Lasso with high alpha produces sparser model.
#[test]
fn regularization_lasso_sparsity_increases_with_alpha() {
    use scry_learn::linear::LassoRegression;

    let data = gen_regression_dataset(300, 42);

    let count_zeros =
        |coefs: &[f64], thresh: f64| -> usize { coefs.iter().filter(|c| c.abs() < thresh).count() };

    // Low alpha: less regularization, more non-zero coefficients.
    let mut lasso_low = LassoRegression::new().alpha(0.001).max_iter(5000);
    lasso_low.fit(&data).unwrap();
    let zeros_low = count_zeros(lasso_low.coefficients(), 0.01);

    // High alpha: more regularization, more zero coefficients.
    let mut lasso_high = LassoRegression::new().alpha(10.0).max_iter(5000);
    lasso_high.fit(&data).unwrap();
    let zeros_high = count_zeros(lasso_high.coefficients(), 0.01);

    eprintln!("Lasso α=0.001 near-zero coeffs: {zeros_low}");
    eprintln!("Lasso α=10.0  near-zero coeffs: {zeros_high}");

    assert!(
        zeros_high >= zeros_low,
        "Higher alpha should produce ≥ as many near-zero coefficients: high={zeros_high} vs low={zeros_low}"
    );
}

/// RF overfitting check: training accuracy ≥ test accuracy.
#[test]
fn overfitting_rf_train_vs_test() {
    use scry_learn::tree::RandomForestClassifier;

    let data = iris_dataset();
    let (train, test) = scry_learn::split::train_test_split(&data, 0.3, 42);

    // Deep forest with no max_depth → should overfit training data.
    let mut rf = RandomForestClassifier::new().n_estimators(100).seed(42);
    rf.fit(&train).unwrap();

    let train_preds = rf.predict(&train.feature_matrix()).unwrap();
    let test_preds = rf.predict(&test.feature_matrix()).unwrap();

    let train_acc = accuracy(&train.target, &train_preds);
    let test_acc = accuracy(&test.target, &test_preds);

    eprintln!(
        "RF train acc: {:.1}%, test acc: {:.1}%",
        train_acc * 100.0,
        test_acc * 100.0
    );

    // Training accuracy should be ≥ test accuracy (model fits training data better)
    assert!(
        train_acc >= test_acc - 0.05,
        "Train accuracy should be ≥ test accuracy (minus small tolerance): train={:.1}% vs test={:.1}%",
        train_acc * 100.0, test_acc * 100.0
    );

    // Training accuracy should be very high (near 100%) for unrestricted RF
    assert!(
        train_acc >= 0.95,
        "Unrestricted RF should achieve ≥95% train accuracy (got {:.1}%)",
        train_acc * 100.0
    );
}

// ═══════════════════════════════════════════════════════════════════
// 4.5F: Convergence & determinism tests
// ═══════════════════════════════════════════════════════════════════

/// Same seed → identical RF predictions (determinism).
#[test]
fn determinism_rf_same_seed() {
    use scry_learn::tree::RandomForestClassifier;

    let data = iris_dataset();
    let (train, test) = scry_learn::split::train_test_split(&data, 0.2, 42);

    let mut rf1 = RandomForestClassifier::new()
        .n_estimators(50)
        .max_depth(5)
        .seed(123);
    rf1.fit(&train).unwrap();
    let preds1 = rf1.predict(&test.feature_matrix()).unwrap();

    let mut rf2 = RandomForestClassifier::new()
        .n_estimators(50)
        .max_depth(5)
        .seed(123);
    rf2.fit(&train).unwrap();
    let preds2 = rf2.predict(&test.feature_matrix()).unwrap();

    assert_eq!(preds1.len(), preds2.len());
    for (i, (p1, p2)) in preds1.iter().zip(preds2.iter()).enumerate() {
        assert!(
            (p1 - p2).abs() < 1e-10,
            "RF predictions diverged at sample {i}: {p1} vs {p2}"
        );
    }
    eprintln!("RF determinism: identical predictions across 2 runs with same seed ✓");
}

/// Same seed → identical GBT predictions (determinism).
#[test]
fn determinism_gbt_same_seed() {
    use scry_learn::tree::GradientBoostingClassifier;

    let data = iris_dataset();
    let (train, test) = scry_learn::split::train_test_split(&data, 0.2, 42);

    let mut gbt1 = GradientBoostingClassifier::new()
        .n_estimators(50)
        .learning_rate(0.1)
        .max_depth(3)
        .seed(123);
    gbt1.fit(&train).unwrap();
    let preds1 = gbt1.predict(&test.feature_matrix()).unwrap();

    let mut gbt2 = GradientBoostingClassifier::new()
        .n_estimators(50)
        .learning_rate(0.1)
        .max_depth(3)
        .seed(123);
    gbt2.fit(&train).unwrap();
    let preds2 = gbt2.predict(&test.feature_matrix()).unwrap();

    for (i, (p1, p2)) in preds1.iter().zip(preds2.iter()).enumerate() {
        assert!(
            (p1 - p2).abs() < 1e-10,
            "GBT predictions diverged at sample {i}: {p1} vs {p2}"
        );
    }
    eprintln!("GBT determinism: identical predictions across 2 runs with same seed ✓");
}

/// Same seed → identical `KMeans` labels (determinism).
#[test]
fn determinism_kmeans_same_seed() {
    use scry_learn::cluster::KMeans;

    let data = iris_dataset();

    let mut km1 = KMeans::new(3).seed(42).n_init(1).max_iter(300);
    km1.fit(&data).unwrap();
    let labels1: Vec<usize> = km1.labels().to_vec();

    let mut km2 = KMeans::new(3).seed(42).n_init(1).max_iter(300);
    km2.fit(&data).unwrap();
    let labels2: Vec<usize> = km2.labels().to_vec();

    assert_eq!(
        labels1, labels2,
        "KMeans with same seed should produce identical labels"
    );
    eprintln!("KMeans determinism: identical labels across 2 runs with same seed ✓");
}

/// `LogisticRegression` with GD and L-BFGS should converge to similar loss.
#[test]
fn convergence_logreg_solvers_agree() {
    use scry_learn::linear::LogisticRegression;
    use scry_learn::preprocess::{StandardScaler, Transformer};

    let data = iris_dataset();
    let mut ds = data;

    let mut scaler = StandardScaler::new();
    scaler.fit(&ds).unwrap();
    scaler.transform(&mut ds).unwrap();

    // L-BFGS solver
    let mut lr_lbfgs = LogisticRegression::new()
        .alpha(0.0)
        .max_iter(500)
        .solver(scry_learn::linear::Solver::Lbfgs);
    lr_lbfgs.fit(&ds).unwrap();
    let preds_lbfgs = lr_lbfgs.predict(&ds.feature_matrix()).unwrap();
    let acc_lbfgs = accuracy(&ds.target, &preds_lbfgs);

    // GD solver
    let mut lr_gd = LogisticRegression::new()
        .alpha(0.0)
        .max_iter(2000)
        .learning_rate(0.05)
        .solver(scry_learn::linear::Solver::GradientDescent);
    lr_gd.fit(&ds).unwrap();
    let preds_gd = lr_gd.predict(&ds.feature_matrix()).unwrap();
    let acc_gd = accuracy(&ds.target, &preds_gd);

    eprintln!("LogReg L-BFGS accuracy: {:.1}%", acc_lbfgs * 100.0);
    eprintln!("LogReg GD accuracy:     {:.1}%", acc_gd * 100.0);

    // Both solvers should achieve reasonable accuracy on the same data.
    assert!(
        acc_lbfgs >= 0.90,
        "L-BFGS should achieve ≥90% (got {:.1}%)",
        acc_lbfgs * 100.0
    );
    assert!(
        acc_gd >= 0.85,
        "GD should achieve ≥85% (got {:.1}%)",
        acc_gd * 100.0
    );

    // They should be within 10% of each other.
    let diff = (acc_lbfgs - acc_gd).abs();
    assert!(
        diff <= 0.10,
        "L-BFGS and GD should converge to similar accuracy: L-BFGS={:.1}%, GD={:.1}% (gap={:.1}%)",
        acc_lbfgs * 100.0,
        acc_gd * 100.0,
        diff * 100.0
    );
}

/// GBT Regressor: increasing `n_estimators` should decrease training error.
#[test]
fn convergence_gbt_error_decreases_with_estimators() {
    use scry_learn::tree::GradientBoostingRegressor;

    let data = gen_regression_dataset(200, 42);
    let estimator_counts = [5, 20, 50, 100];
    let mut prev_mse = f64::INFINITY;

    for &n_est in &estimator_counts {
        let mut gbt = GradientBoostingRegressor::new()
            .n_estimators(n_est)
            .learning_rate(0.1)
            .max_depth(3)
            .seed(42);
        gbt.fit(&data).unwrap();

        let preds = gbt.predict(&data.feature_matrix()).unwrap();
        let mse: f64 = preds
            .iter()
            .zip(data.target.iter())
            .map(|(p, t)| (p - t).powi(2))
            .sum::<f64>()
            / data.target.len() as f64;

        eprintln!("GBT n_estimators={n_est}: MSE={mse:.4}");
        assert!(
            mse <= prev_mse + 0.1,
            "GBT training error should decrease with more estimators: {n_est} est → MSE={mse:.4}, prev={prev_mse:.4}"
        );
        prev_mse = mse;
    }

    // Final MSE with 100 estimators should be very low
    assert!(
        prev_mse < 1.0,
        "GBT with 100 estimators should achieve MSE < 1.0 (got {prev_mse:.4})"
    );
}