1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
//! GPU-accelerated transformations
//!
//! This module provides GPU-accelerated implementations of dimensionality reduction
//! and matrix operations. Currently provides basic stubs with CPU fallback.
use crate::error::{Result, TransformError};
use scirs2_core::gpu::{GpuBackend, GpuContext};
use scirs2_core::ndarray::{Array1, Array2, ArrayView2};
use scirs2_core::validation::{check_not_empty, check_positive, checkarray_finite};
/// GPU-accelerated Principal Component Analysis
#[cfg(feature = "gpu")]
pub struct GpuPCA {
/// Number of components to compute
pub n_components: usize,
/// Whether to center the data
pub center: bool,
/// Principal components (loading vectors)
pub components: Option<Array2<f64>>,
/// Explained variance for each component
pub explained_variance: Option<Array1<f64>>,
/// Mean values for centering
pub mean: Option<Array1<f64>>,
/// GPU context for GPU operations
gpu_context: Option<GpuContext>,
}
#[cfg(feature = "gpu")]
impl GpuPCA {
/// Create a new GPU PCA instance
///
/// # Arguments
///
/// * `n_components` - Number of principal components to compute
///
/// # Returns
///
/// Returns a new GpuPCA instance with GPU context initialized
///
/// # Errors
///
/// Returns an error if GPU initialization fails or if n_components is 0
///
/// # Examples
///
/// ```
/// # use scirs2_transform::gpu::GpuPCA;
/// # fn main() -> Result<(), Box<dyn std::error::Error>> {
/// let pca = GpuPCA::new(5)?;
/// # Ok(())
/// # }
/// ```
pub fn new(n_components: usize) -> Result<Self> {
check_positive(n_components, "n_components")?;
let gpu_context = GpuContext::new(GpuBackend::preferred()).map_err(|e| {
TransformError::ComputationError(format!("Failed to initialize GPU: {}", e))
})?;
Ok(GpuPCA {
n_components,
center: true,
components: None,
explained_variance: None,
mean: None,
gpu_context: Some(gpu_context),
})
}
/// Fit the PCA model on GPU
///
/// Currently this is a placeholder implementation that will return an error
/// indicating that full GPU PCA support is not yet implemented.
///
/// # Arguments
///
/// * `x` - Input data matrix with shape (n_samples, n_features)
///
/// # Errors
///
/// Returns an error indicating that GPU PCA is not fully implemented yet
///
/// # Examples
///
/// ```should_panic
/// # use scirs2_transform::gpu::GpuPCA;
/// # use scirs2_core::ndarray::Array2;
/// # fn main() -> Result<(), Box<dyn std::error::Error>> {
/// let mut pca = GpuPCA::new(2)?;
/// let data = Array2::zeros((100, 5));
/// // This will return an error indicating GPU PCA is not implemented
/// pca.fit(&data.view())?;
/// # Ok(())
/// # }
/// ```
pub fn fit(&mut self, x: &ArrayView2<f64>) -> Result<()> {
check_not_empty(x, "x")?;
checkarray_finite(x, "x")?;
// Validate input
let (n_samples, n_features) = x.dim();
if self.n_components > n_features.min(n_samples) {
return Err(TransformError::InvalidInput(
"n_components cannot be larger than min(n_samples, n_features)".to_string(),
));
}
// For now, return an error indicating GPU PCA is not fully implemented
Err(TransformError::NotImplemented(
"GPU-accelerated PCA is not yet fully implemented. Use CPU PCA instead.".to_string(),
))
}
/// Transform data using the fitted PCA model on GPU
///
/// Currently this is a placeholder implementation that will return an error
/// indicating that full GPU PCA support is not yet implemented.
///
/// # Arguments
///
/// * `x` - Input data matrix with shape (n_samples, n_features)
///
/// # Returns
///
/// Transformed data matrix with shape (n_samples, n_components)
///
/// # Errors
///
/// Returns an error indicating that GPU PCA is not fully implemented yet
pub fn transform(&self, x: &ArrayView2<f64>) -> Result<Array2<f64>> {
check_not_empty(x, "x")?;
checkarray_finite(x, "x")?;
Err(TransformError::NotImplemented(
"GPU-accelerated PCA transform is not yet fully implemented. Use CPU PCA instead."
.to_string(),
))
}
/// Fit the PCA model and transform data in one step
///
/// Currently this is a placeholder implementation that will return an error
/// indicating that full GPU PCA support is not yet implemented.
///
/// # Arguments
///
/// * `x` - Input data matrix with shape (n_samples, n_features)
///
/// # Returns
///
/// Transformed data matrix with shape (n_samples, n_components)
///
/// # Errors
///
/// Returns an error indicating that GPU PCA is not fully implemented yet
pub fn fit_transform(&mut self, x: &ArrayView2<f64>) -> Result<Array2<f64>> {
self.fit(x)?;
self.transform(x)
}
/// Get the explained variance ratio for each principal component
///
/// # Returns
///
/// Array of explained variance ratios with length n_components
///
/// # Errors
///
/// Returns an error if the model has not been fitted
pub fn explained_variance_ratio(&self) -> Result<Array1<f64>> {
let explained_var = self
.explained_variance
.as_ref()
.ok_or_else(|| TransformError::NotFitted("PCA model not fitted".to_string()))?;
let total_var = explained_var.sum();
Ok(explained_var / total_var)
}
}
/// GPU-accelerated matrix operations for transformations
#[cfg(feature = "gpu")]
pub struct GpuMatrixOps {
#[allow(dead_code)]
gpu_context: GpuContext,
}
#[cfg(feature = "gpu")]
impl GpuMatrixOps {
/// Create new GPU matrix operations instance
pub fn new() -> Result<Self> {
let gpu_context = GpuContext::new(GpuBackend::preferred()).map_err(|e| {
TransformError::ComputationError(format!("Failed to initialize GPU: {}", e))
})?;
Ok(GpuMatrixOps { gpu_context })
}
/// GPU-accelerated matrix multiplication (placeholder)
pub fn matmul(self_a: &ArrayView2<f64>, b: &ArrayView2<f64>) -> Result<Array2<f64>> {
Err(TransformError::NotImplemented(
"GPU matrix multiplication is not yet implemented. Use CPU operations instead."
.to_string(),
))
}
/// GPU-accelerated SVD decomposition (placeholder)
pub fn svd(selfa: &ArrayView2<f64>) -> Result<(Array2<f64>, Array1<f64>, Array2<f64>)> {
Err(TransformError::NotImplemented(
"GPU SVD is not yet implemented. Use CPU operations instead.".to_string(),
))
}
/// GPU-accelerated eigendecomposition (placeholder)
pub fn eigh(selfa: &ArrayView2<f64>) -> Result<(Array1<f64>, Array2<f64>)> {
Err(TransformError::NotImplemented(
"GPU eigendecomposition is not yet implemented. Use CPU operations instead."
.to_string(),
))
}
}
/// GPU-accelerated t-SNE implementation
#[cfg(feature = "gpu")]
pub struct GpuTSNE {
/// Number of dimensions for the embedding
pub n_components: usize,
/// Perplexity parameter
pub perplexity: f64,
/// Learning rate
pub learning_rate: f64,
/// Maximum number of iterations
pub max_iter: usize,
/// GPU context
#[allow(dead_code)]
gpu_context: GpuContext,
}
#[cfg(feature = "gpu")]
impl GpuTSNE {
/// Create new GPU t-SNE instance
pub fn new(n_components: usize) -> Result<Self> {
check_positive(n_components, "n_components")?;
let gpu_context = GpuContext::new(GpuBackend::preferred()).map_err(|e| {
TransformError::ComputationError(format!("Failed to initialize GPU: {}", e))
})?;
Ok(GpuTSNE {
n_components,
perplexity: 30.0,
learning_rate: 200.0,
max_iter: 1000,
gpu_context,
})
}
/// Set perplexity parameter
pub fn with_perplexity(mut self, perplexity: f64) -> Self {
self.perplexity = perplexity;
self
}
/// Set learning rate
pub fn with_learning_rate(mut self, learning_rate: f64) -> Self {
self.learning_rate = learning_rate;
self
}
/// Set maximum iterations
pub fn with_max_iter(mut self, max_iter: usize) -> Self {
self.max_iter = max_iter;
self
}
/// Fit and transform data using GPU-accelerated t-SNE (placeholder)
pub fn fit_transform(selfx: &ArrayView2<f64>) -> Result<Array2<f64>> {
Err(TransformError::NotImplemented(
"GPU t-SNE is not yet implemented. Use CPU t-SNE instead.".to_string(),
))
}
}
// Stub implementations when GPU feature is not enabled
#[cfg(not(feature = "gpu"))]
pub struct GpuPCA;
#[cfg(not(feature = "gpu"))]
pub struct GpuMatrixOps;
#[cfg(not(feature = "gpu"))]
pub struct GpuTSNE;
#[cfg(not(feature = "gpu"))]
impl GpuPCA {
pub fn new(_ncomponents: usize) -> Result<Self> {
Err(TransformError::FeatureNotEnabled(
"GPU acceleration requires the 'gpu' feature to be enabled".to_string(),
))
}
}
#[cfg(not(feature = "gpu"))]
impl GpuMatrixOps {
pub fn new() -> Result<Self> {
Err(TransformError::FeatureNotEnabled(
"GPU acceleration requires the 'gpu' feature to be enabled".to_string(),
))
}
}
#[cfg(not(feature = "gpu"))]
impl GpuTSNE {
pub fn new(_ncomponents: usize) -> Result<Self> {
Err(TransformError::FeatureNotEnabled(
"GPU acceleration requires the 'gpu' feature to be enabled".to_string(),
))
}
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
#[cfg(feature = "gpu")]
fn test_gpu_pca_creation() {
let pca = GpuPCA::new(3);
assert!(pca.is_ok());
let pca = pca.expect("Operation failed");
assert_eq!(pca.n_components, 3);
assert!(pca.center);
assert!(pca.components.is_none());
assert!(pca.explained_variance.is_none());
assert!(pca.mean.is_none());
}
#[test]
#[cfg(feature = "gpu")]
fn test_gpu_pca_invalid_components() {
let result = GpuPCA::new(0);
assert!(result.is_err());
}
#[test]
#[cfg(feature = "gpu")]
fn test_gpu_matrix_ops_creation() {
let ops = GpuMatrixOps::new();
assert!(ops.is_ok());
}
#[test]
#[cfg(feature = "gpu")]
fn test_gpu_tsne_creation() {
let tsne = GpuTSNE::new(2);
assert!(tsne.is_ok());
let tsne = tsne.expect("Operation failed");
assert_eq!(tsne.n_components, 2);
assert_eq!(tsne.perplexity, 30.0);
assert_eq!(tsne.learning_rate, 200.0);
assert_eq!(tsne.max_iter, 1000);
}
#[test]
#[cfg(feature = "gpu")]
fn test_gpu_tsne_with_params() {
let tsne = GpuTSNE::new(3)
.expect("Operation failed")
.with_perplexity(50.0)
.with_learning_rate(100.0)
.with_max_iter(500);
assert_eq!(tsne.n_components, 3);
assert_eq!(tsne.perplexity, 50.0);
assert_eq!(tsne.learning_rate, 100.0);
assert_eq!(tsne.max_iter, 500);
}
#[test]
#[cfg(not(feature = "gpu"))]
fn test_gpu_features_disabled() {
assert!(GpuPCA::new(2).is_err());
assert!(GpuMatrixOps::new().is_err());
assert!(GpuTSNE::new(2).is_err());
}
}