scirs2-io 0.4.2

Input/Output utilities module for SciRS2 (scirs2-io)
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
//! Lance columnar format binary writer and reader.
//!
//! Binary layout
//! ─────────────
//! File = Magic(8) + SchemaLen(4 LE u32) + SchemaJSON(N) + Batch* + Footer
//! Batch = NumRows(4 LE u32) + Column*
//! Column = TypeTag(1) + Nullable(1: 0 or 1) + DataLen(4 LE u32) + Data(N)
//!          [if Nullable == 1: ValidityLen(4) + ValidityBytes follows Data]
//! Footer = BatchCount(4 LE u32) + FooterMagic(8)
//!
//! String encoding inside a column's `Data` block:
//!   for each string: Len(4 LE u32) + UTF-8 bytes
//! Boolean: 1 byte per element (0 = false, 1 = true)
//! All other primitives: little-endian raw bytes.

use std::io::{self, Read, Seek, SeekFrom, Write};

use serde_json;

use super::types::{LanceBatch, LanceColumn, LanceDataType, LanceSchema};

/// Magic bytes at the start of every Lance file.
pub const LANCE_MAGIC: &[u8; 8] = b"LANCE001";
/// Footer magic bytes at the end of every Lance file.
pub const LANCE_EOF: &[u8; 8] = b"LANCEEOF";

// ─────────────────────────────────────────────────────────────────────────────
// LanceWriter
// ─────────────────────────────────────────────────────────────────────────────

/// Writes Lance batches to any `Write` sink.
pub struct LanceWriter<W: Write> {
    writer: W,
    schema: LanceSchema,
    batches_written: usize,
}

impl<W: Write> LanceWriter<W> {
    /// Create a new writer, emitting the file header (magic + schema).
    pub fn new(mut writer: W, schema: LanceSchema) -> io::Result<Self> {
        // Magic
        writer.write_all(LANCE_MAGIC)?;
        // Schema JSON with 4-byte length prefix
        let schema_json = serde_json::to_vec(&schema)
            .map_err(|e| io::Error::new(io::ErrorKind::InvalidData, e))?;
        let schema_len = schema_json.len() as u32;
        writer.write_all(&schema_len.to_le_bytes())?;
        writer.write_all(&schema_json)?;
        Ok(Self {
            writer,
            schema,
            batches_written: 0,
        })
    }

    /// Write a single batch.
    pub fn write_batch(&mut self, batch: &LanceBatch) -> io::Result<()> {
        let num_rows = batch.num_rows as u32;
        self.writer.write_all(&num_rows.to_le_bytes())?;
        for col in &batch.columns {
            write_column(&mut self.writer, col)?;
        }
        self.batches_written += 1;
        Ok(())
    }

    /// Finalise the file by writing the footer and returning the inner writer.
    pub fn finish(mut self) -> io::Result<W> {
        let batch_count = self.batches_written as u32;
        self.writer.write_all(&batch_count.to_le_bytes())?;
        self.writer.write_all(LANCE_EOF)?;
        Ok(self.writer)
    }

    /// Reference to the schema.
    pub fn schema(&self) -> &LanceSchema {
        &self.schema
    }
}

// ─────────────────────────────────────────────────────────────────────────────
// LanceReader
// ─────────────────────────────────────────────────────────────────────────────

/// Reads Lance batches from any `Read + Seek` source.
pub struct LanceReader<R: Read + Seek> {
    reader: R,
    schema: LanceSchema,
    /// Offset just after the schema block (= start of first batch).
    data_start: u64,
    /// Total number of batches in the file (read from footer).
    total_batches: usize,
    /// How many batches have been read by sequential `read_batch` calls.
    batches_read: usize,
}

impl<R: Read + Seek> LanceReader<R> {
    /// Open a Lance reader, validating the magic and reading the schema.
    ///
    /// Seeks to the footer to determine the total number of batches, then
    /// rewinds to the first batch so that `read_batch` works correctly.
    pub fn new(mut reader: R) -> io::Result<Self> {
        // Check magic
        let mut magic = [0u8; 8];
        reader.read_exact(&mut magic)?;
        if &magic != LANCE_MAGIC {
            return Err(io::Error::new(
                io::ErrorKind::InvalidData,
                "Not a Lance file: bad magic bytes",
            ));
        }
        // Schema
        let mut len_buf = [0u8; 4];
        reader.read_exact(&mut len_buf)?;
        let schema_len = u32::from_le_bytes(len_buf) as usize;
        let mut schema_bytes = vec![0u8; schema_len];
        reader.read_exact(&mut schema_bytes)?;
        let schema: LanceSchema = serde_json::from_slice(&schema_bytes)
            .map_err(|e| io::Error::new(io::ErrorKind::InvalidData, e))?;
        let data_start = reader.stream_position()?;

        // Read the footer to learn total_batches.
        // Footer layout: BatchCount(4 LE u32) + LANCEEOF(8) = 12 bytes from the end.
        let total_batches = match reader.seek(SeekFrom::End(-12)) {
            Ok(_) => {
                let mut fbuf = [0u8; 4];
                reader.read_exact(&mut fbuf)?;
                let mut eofbuf = [0u8; 8];
                reader.read_exact(&mut eofbuf)?;
                if &eofbuf == LANCE_EOF {
                    u32::from_le_bytes(fbuf) as usize
                } else {
                    0
                }
            }
            Err(_) => 0,
        };

        // Rewind to the first batch.
        reader.seek(SeekFrom::Start(data_start))?;

        Ok(Self {
            reader,
            schema,
            data_start,
            total_batches,
            batches_read: 0,
        })
    }

    /// The file schema.
    pub fn schema(&self) -> &LanceSchema {
        &self.schema
    }

    /// Total number of batches in the file.
    pub fn total_batches(&self) -> usize {
        self.total_batches
    }

    /// Read the next batch sequentially.
    ///
    /// Returns `Ok(None)` after all `total_batches` batches have been read.
    pub fn read_batch(&mut self) -> io::Result<Option<LanceBatch>> {
        if self.batches_read >= self.total_batches {
            return Ok(None);
        }

        let mut buf4 = [0u8; 4];
        match self.reader.read_exact(&mut buf4) {
            Ok(()) => {}
            Err(e) if e.kind() == io::ErrorKind::UnexpectedEof => return Ok(None),
            Err(e) => return Err(e),
        }
        let num_rows = u32::from_le_bytes(buf4) as usize;

        let mut columns = Vec::with_capacity(self.schema.fields.len());
        for _field in &self.schema.fields {
            match read_column(&mut self.reader, num_rows) {
                Ok(col) => columns.push(col),
                Err(e) if e.kind() == io::ErrorKind::UnexpectedEof => return Ok(None),
                Err(e) => return Err(e),
            }
        }

        self.batches_read += 1;
        Ok(Some(LanceBatch::new(
            self.schema.clone(),
            columns,
            num_rows,
        )))
    }

    /// Read all batches into a `Vec`, rewinding to the beginning first.
    pub fn collect_all(&mut self) -> io::Result<Vec<LanceBatch>> {
        self.reader.seek(SeekFrom::Start(self.data_start))?;
        self.batches_read = 0;
        let mut batches = Vec::new();
        while let Some(b) = self.read_batch()? {
            batches.push(b);
        }
        Ok(batches)
    }
}

// ─────────────────────────────────────────────────────────────────────────────
// Column serialisation helpers
// ─────────────────────────────────────────────────────────────────────────────

fn write_column<W: Write>(w: &mut W, col: &LanceColumn) -> io::Result<()> {
    match col {
        LanceColumn::Nullable(inner, validity) => {
            // type_tag of inner, nullable flag = 1
            w.write_all(&[inner.data_type().type_tag(), 1u8])?;
            let raw = encode_column_data(inner)?;
            w.write_all(&(raw.len() as u32).to_le_bytes())?;
            w.write_all(&raw)?;
            // validity bitmap: 1 byte per element
            let validity_bytes: Vec<u8> = validity.iter().map(|&b| b as u8).collect();
            w.write_all(&(validity_bytes.len() as u32).to_le_bytes())?;
            w.write_all(&validity_bytes)?;
        }
        _ => {
            w.write_all(&[col.data_type().type_tag(), 0u8])?;
            let raw = encode_column_data(col)?;
            w.write_all(&(raw.len() as u32).to_le_bytes())?;
            w.write_all(&raw)?;
        }
    }
    Ok(())
}

fn encode_column_data(col: &LanceColumn) -> io::Result<Vec<u8>> {
    match col {
        LanceColumn::Float32(v) => {
            let mut buf = Vec::with_capacity(v.len() * 4);
            for &x in v {
                buf.extend_from_slice(&x.to_le_bytes());
            }
            Ok(buf)
        }
        LanceColumn::Float64(v) => {
            let mut buf = Vec::with_capacity(v.len() * 8);
            for &x in v {
                buf.extend_from_slice(&x.to_le_bytes());
            }
            Ok(buf)
        }
        LanceColumn::Int32(v) => {
            let mut buf = Vec::with_capacity(v.len() * 4);
            for &x in v {
                buf.extend_from_slice(&x.to_le_bytes());
            }
            Ok(buf)
        }
        LanceColumn::Int64(v) => {
            let mut buf = Vec::with_capacity(v.len() * 8);
            for &x in v {
                buf.extend_from_slice(&x.to_le_bytes());
            }
            Ok(buf)
        }
        LanceColumn::UInt32(v) => {
            let mut buf = Vec::with_capacity(v.len() * 4);
            for &x in v {
                buf.extend_from_slice(&x.to_le_bytes());
            }
            Ok(buf)
        }
        LanceColumn::UInt64(v) => {
            let mut buf = Vec::with_capacity(v.len() * 8);
            for &x in v {
                buf.extend_from_slice(&x.to_le_bytes());
            }
            Ok(buf)
        }
        LanceColumn::Utf8(v) => {
            let mut buf = Vec::new();
            for s in v {
                let bytes = s.as_bytes();
                buf.extend_from_slice(&(bytes.len() as u32).to_le_bytes());
                buf.extend_from_slice(bytes);
            }
            Ok(buf)
        }
        LanceColumn::Boolean(v) => Ok(v.iter().map(|&b| b as u8).collect()),
        LanceColumn::Nullable(inner, _) => encode_column_data(inner),
    }
}

fn read_column<R: Read>(r: &mut R, num_rows: usize) -> io::Result<LanceColumn> {
    let mut hdr = [0u8; 2];
    r.read_exact(&mut hdr)?;
    let type_tag = hdr[0];
    let nullable_flag = hdr[1] != 0;

    let dtype = LanceDataType::from_type_tag(type_tag).ok_or_else(|| {
        io::Error::new(
            io::ErrorKind::InvalidData,
            format!("Unknown Lance type tag: {type_tag}"),
        )
    })?;

    let mut len_buf = [0u8; 4];
    r.read_exact(&mut len_buf)?;
    let data_len = u32::from_le_bytes(len_buf) as usize;
    let mut raw = vec![0u8; data_len];
    r.read_exact(&mut raw)?;

    let col = decode_column_data(&raw, &dtype, num_rows)?;

    if nullable_flag {
        let mut vlen_buf = [0u8; 4];
        r.read_exact(&mut vlen_buf)?;
        let vlen = u32::from_le_bytes(vlen_buf) as usize;
        let mut validity_raw = vec![0u8; vlen];
        r.read_exact(&mut validity_raw)?;
        let validity: Vec<bool> = validity_raw.iter().map(|&b| b != 0).collect();
        Ok(LanceColumn::Nullable(Box::new(col), validity))
    } else {
        Ok(col)
    }
}

fn decode_column_data(
    raw: &[u8],
    dtype: &LanceDataType,
    num_rows: usize,
) -> io::Result<LanceColumn> {
    match dtype {
        LanceDataType::Float32 => {
            if raw.len() < num_rows * 4 {
                return Err(io::Error::new(
                    io::ErrorKind::InvalidData,
                    "Float32 data too short",
                ));
            }
            let v: Vec<f32> = raw
                .chunks_exact(4)
                .map(|c| f32::from_le_bytes(c.try_into().unwrap_or([0; 4])))
                .collect();
            Ok(LanceColumn::Float32(v))
        }
        LanceDataType::Float64 => {
            if raw.len() < num_rows * 8 {
                return Err(io::Error::new(
                    io::ErrorKind::InvalidData,
                    "Float64 data too short",
                ));
            }
            let v: Vec<f64> = raw
                .chunks_exact(8)
                .map(|c| f64::from_le_bytes(c.try_into().unwrap_or([0; 8])))
                .collect();
            Ok(LanceColumn::Float64(v))
        }
        LanceDataType::Int32 => {
            let v: Vec<i32> = raw
                .chunks_exact(4)
                .map(|c| i32::from_le_bytes(c.try_into().unwrap_or([0; 4])))
                .collect();
            Ok(LanceColumn::Int32(v))
        }
        LanceDataType::Int64 => {
            let v: Vec<i64> = raw
                .chunks_exact(8)
                .map(|c| i64::from_le_bytes(c.try_into().unwrap_or([0; 8])))
                .collect();
            Ok(LanceColumn::Int64(v))
        }
        LanceDataType::UInt32 => {
            let v: Vec<u32> = raw
                .chunks_exact(4)
                .map(|c| u32::from_le_bytes(c.try_into().unwrap_or([0; 4])))
                .collect();
            Ok(LanceColumn::UInt32(v))
        }
        LanceDataType::UInt64 => {
            let v: Vec<u64> = raw
                .chunks_exact(8)
                .map(|c| u64::from_le_bytes(c.try_into().unwrap_or([0; 8])))
                .collect();
            Ok(LanceColumn::UInt64(v))
        }
        LanceDataType::Utf8 => {
            let mut strings = Vec::with_capacity(num_rows);
            let mut pos = 0usize;
            while pos + 4 <= raw.len() {
                let slen =
                    u32::from_le_bytes(raw[pos..pos + 4].try_into().unwrap_or([0; 4])) as usize;
                pos += 4;
                if pos + slen > raw.len() {
                    return Err(io::Error::new(
                        io::ErrorKind::InvalidData,
                        "Utf8 string out of bounds",
                    ));
                }
                let s = String::from_utf8(raw[pos..pos + slen].to_vec())
                    .map_err(|e| io::Error::new(io::ErrorKind::InvalidData, e))?;
                strings.push(s);
                pos += slen;
            }
            Ok(LanceColumn::Utf8(strings))
        }
        LanceDataType::Boolean => {
            let v: Vec<bool> = raw.iter().map(|&b| b != 0).collect();
            Ok(LanceColumn::Boolean(v))
        }
    }
}

// ─────────────────────────────────────────────────────────────────────────────
// Tests
// ─────────────────────────────────────────────────────────────────────────────

#[cfg(test)]
mod tests {
    use super::*;
    use crate::lance::types::{LanceField, LanceSchema};
    use std::io::Cursor;

    fn simple_schema() -> LanceSchema {
        LanceSchema::new(vec![
            LanceField::new("x", LanceDataType::Float64),
            LanceField::new("label", LanceDataType::Utf8),
        ])
    }

    #[test]
    fn test_lance_magic_bytes_present() {
        let schema = simple_schema();
        let mut buf = Vec::new();
        let writer = LanceWriter::new(&mut buf, schema).expect("create writer");
        writer.finish().expect("finish");
        assert_eq!(&buf[..8], LANCE_MAGIC);
    }

    #[test]
    fn test_lance_write_read_float64_column() {
        let schema = LanceSchema::new(vec![LanceField::new("v", LanceDataType::Float64)]);
        let mut buf = Vec::new();
        {
            let mut writer = LanceWriter::new(&mut buf, schema.clone()).expect("create writer");
            let batch = LanceBatch::new(
                schema.clone(),
                vec![LanceColumn::Float64(vec![1.0, 2.0, 3.0])],
                3,
            );
            writer.write_batch(&batch).expect("write");
            writer.finish().expect("finish");
        }
        let cursor = Cursor::new(buf);
        let mut reader = LanceReader::new(cursor).expect("open reader");
        let batches = reader.collect_all().expect("collect");
        assert_eq!(batches.len(), 1);
        match &batches[0].columns[0] {
            LanceColumn::Float64(v) => assert_eq!(v, &[1.0, 2.0, 3.0]),
            _ => panic!("unexpected column type"),
        }
    }

    #[test]
    fn test_lance_write_read_utf8_column() {
        let schema = LanceSchema::new(vec![LanceField::new("name", LanceDataType::Utf8)]);
        let mut buf = Vec::new();
        {
            let mut writer = LanceWriter::new(&mut buf, schema.clone()).expect("create");
            let batch = LanceBatch::new(
                schema.clone(),
                vec![LanceColumn::Utf8(vec![
                    "hello".into(),
                    "world".into(),
                    "lance".into(),
                ])],
                3,
            );
            writer.write_batch(&batch).expect("write");
            writer.finish().expect("finish");
        }
        let mut reader = LanceReader::new(Cursor::new(buf)).expect("open");
        let batches = reader.collect_all().expect("collect");
        assert_eq!(batches.len(), 1);
        match &batches[0].columns[0] {
            LanceColumn::Utf8(v) => {
                assert_eq!(v[0], "hello");
                assert_eq!(v[2], "lance");
            }
            _ => panic!("unexpected column type"),
        }
    }

    #[test]
    fn test_lance_multiple_batches() {
        let schema = LanceSchema::new(vec![LanceField::new("n", LanceDataType::Int32)]);
        let mut buf = Vec::new();
        {
            let mut writer = LanceWriter::new(&mut buf, schema.clone()).expect("create");
            for i in 0..3u32 {
                let batch =
                    LanceBatch::new(schema.clone(), vec![LanceColumn::Int32(vec![i as i32])], 1);
                writer.write_batch(&batch).expect("write batch");
            }
            writer.finish().expect("finish");
        }
        let mut reader = LanceReader::new(Cursor::new(buf)).expect("open");
        let batches = reader.collect_all().expect("collect");
        assert_eq!(batches.len(), 3);
    }

    #[test]
    fn test_lance_empty_batch() {
        let schema = LanceSchema::new(vec![LanceField::new("x", LanceDataType::Float32)]);
        let mut buf = Vec::new();
        {
            let mut writer = LanceWriter::new(&mut buf, schema.clone()).expect("create");
            let batch = LanceBatch::new(schema.clone(), vec![LanceColumn::Float32(Vec::new())], 0);
            writer.write_batch(&batch).expect("write");
            writer.finish().expect("finish");
        }
        let mut reader = LanceReader::new(Cursor::new(buf)).expect("open");
        let batches = reader.collect_all().expect("collect");
        assert_eq!(batches.len(), 1);
        assert_eq!(batches[0].num_rows, 0);
    }

    #[test]
    fn test_lance_schema_roundtrip() {
        let schema = simple_schema();
        let json = serde_json::to_vec(&schema).expect("serialize");
        let parsed: LanceSchema = serde_json::from_slice(&json).expect("deserialize");
        assert_eq!(parsed.fields.len(), 2);
        assert_eq!(parsed.fields[0].name, "x");
        assert_eq!(parsed.fields[1].name, "label");
    }

    #[test]
    fn test_lance_footer_eof_magic() {
        let schema = LanceSchema::new(vec![]);
        let mut buf = Vec::new();
        {
            let writer = LanceWriter::new(&mut buf, schema).expect("create");
            writer.finish().expect("finish");
        }
        let tail = &buf[buf.len() - 8..];
        assert_eq!(tail, LANCE_EOF);
    }
}