scirs2-graph 0.4.2

Graph processing module for SciRS2 (scirs2-graph)
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
//! Temporal Graph Attention Network (TGAT).
//!
//! Implements the TGAT model from:
//! > Xu, D., Ruan, C., Korpeoglu, E., Kumar, S., & Achan, K. (2020).
//! > "Inductive Representation Learning on Temporal Graphs."
//! > ICLR 2020. <https://arxiv.org/abs/2002.07962>
//!
//! ## Architecture
//!
//! For each node `i` queried at time `t`:
//! 1. Gather temporal neighbors `{(j, t_ij)}` with `t_ij < t` (causal masking).
//! 2. Compute time-aware key/query/value attention across the neighborhood.
//!    - Query: `h_i ⊕ φ(0)` (self at query time)
//!    - Key:   `h_j ⊕ φ(t - t_ij)` (neighbor + time-since-interaction)
//!    - Value: `h_j ⊕ φ(t - t_ij)`
//! 3. Multi-head attention: `head_k = softmax(Q_k K_k^T / √d) V_k`
//! 4. Concatenate heads, project through a linear layer + residual connection.
//!
//! The model can be stacked for multi-hop temporal attention.

use super::time_encoding::{concat, matvec, scaled_dot_product, softmax, xavier_init, relu_vec};
use super::types::{TgatConfig, TgnnGraph, TemporalPrediction};
use crate::error::{GraphError, Result};

// ─────────────────────────────────────────────────────────────────────────────
// TgatLayer
// ─────────────────────────────────────────────────────────────────────────────

/// One layer of Temporal Graph Attention (multi-head).
///
/// Each head operates on a projected space of dimension `head_dim`.
/// The input to each attention head is a concatenation of the node feature
/// and its time encoding, so the actual input width is
/// `node_feat_dim + time_dim`.
#[derive(Debug, Clone)]
pub struct TgatLayer {
    /// Number of attention heads
    pub num_heads: usize,
    /// Dimension per head
    pub head_dim: usize,
    /// Time encoding dimension (must match the TimeEncode used)
    pub time_dim: usize,
    /// Input dimension = node_feat_dim + time_dim
    pub input_dim: usize,
    /// Query projection matrices W_Q^k, one per head (head_dim × input_dim)
    w_q: Vec<Vec<Vec<f64>>>,
    /// Key projection matrices W_K^k (head_dim × input_dim)
    w_k: Vec<Vec<Vec<f64>>>,
    /// Value projection matrices W_V^k (head_dim × input_dim)
    w_v: Vec<Vec<Vec<f64>>>,
    /// Output projection W_O (output_dim × (num_heads * head_dim))
    w_o: Vec<Vec<f64>>,
    /// Output bias b_O (output_dim)
    b_o: Vec<f64>,
    /// Output dimension (= num_heads * head_dim)
    pub output_dim: usize,
}

impl TgatLayer {
    /// Create a new TGAT layer.
    ///
    /// `node_feat_dim` is the dimension of the incoming node feature,
    /// `time_dim` is the dimension of the time encoding output (must be even).
    pub fn new(
        node_feat_dim: usize,
        time_dim: usize,
        num_heads: usize,
        head_dim: usize,
        seed: u64,
    ) -> Result<Self> {
        if num_heads == 0 || head_dim == 0 {
            return Err(GraphError::InvalidParameter {
                param: "num_heads/head_dim".to_string(),
                value: format!("{}/{}", num_heads, head_dim),
                expected: "both > 0".to_string(),
                context: "TgatLayer::new".to_string(),
            });
        }
        let input_dim = node_feat_dim + time_dim;
        let output_dim = num_heads * head_dim;

        let mut w_q = Vec::with_capacity(num_heads);
        let mut w_k = Vec::with_capacity(num_heads);
        let mut w_v = Vec::with_capacity(num_heads);

        for h in 0..num_heads {
            w_q.push(xavier_init(head_dim, input_dim, seed.wrapping_add(h as u64)));
            w_k.push(xavier_init(head_dim, input_dim, seed.wrapping_add(1000 + h as u64)));
            w_v.push(xavier_init(head_dim, input_dim, seed.wrapping_add(2000 + h as u64)));
        }
        let w_o = xavier_init(output_dim, output_dim, seed.wrapping_add(3000));
        let b_o = vec![0.0f64; output_dim];

        Ok(TgatLayer {
            num_heads,
            head_dim,
            time_dim,
            input_dim,
            w_q,
            w_k,
            w_v,
            w_o,
            b_o,
            output_dim,
        })
    }

    /// Forward pass for a single node `i` at query time `t`.
    ///
    /// `h_self` is the current feature of node `i` (length = node_feat_dim).
    /// `neighbors` is a list of `(h_neighbor, t_interaction)` pairs where
    ///   each `h_neighbor` has the same length as `h_self`.
    /// `time_enc` is the time-encoding function to use.
    ///
    /// Returns the updated embedding of shape `output_dim`.
    pub fn forward_node(
        &self,
        h_self: &[f64],
        neighbors: &[(Vec<f64>, f64)],
        query_time: f64,
        time_enc: &super::time_encoding::TimeEncode,
    ) -> Vec<f64> {
        // Query input: self feature + time encoding at Δt=0
        let phi_self = time_enc.encode(0.0);
        let q_input = concat(h_self, &phi_self);

        // If no neighbors, return zero vector
        if neighbors.is_empty() {
            return vec![0.0f64; self.output_dim];
        }

        // Build key/value inputs for each neighbor
        // key_input = h_nbr ‖ φ(t - t_nbr)
        let kv_inputs: Vec<Vec<f64>> = neighbors
            .iter()
            .map(|(h_nbr, t_nbr)| {
                let phi = time_enc.encode_delta(query_time, *t_nbr);
                concat(h_nbr, &phi)
            })
            .collect();

        // Multi-head attention
        let mut head_outputs: Vec<f64> = Vec::with_capacity(self.output_dim);

        for head in 0..self.num_heads {
            // Project query
            let q = matvec(&self.w_q[head], &q_input);

            // Project keys and values
            let keys: Vec<Vec<f64>> = kv_inputs
                .iter()
                .map(|kv| matvec(&self.w_k[head], kv))
                .collect();
            let values: Vec<Vec<f64>> = kv_inputs
                .iter()
                .map(|kv| matvec(&self.w_v[head], kv))
                .collect();

            // Compute attention scores and apply softmax
            let logits = scaled_dot_product(&q, &keys);
            let alphas = softmax(&logits);

            // Weighted sum of values
            let mut attended = vec![0.0f64; self.head_dim];
            for (alpha, val) in alphas.iter().zip(values.iter()) {
                for (a, v) in attended.iter_mut().zip(val.iter()) {
                    *a += alpha * v;
                }
            }
            head_outputs.extend(attended);
        }

        // Output projection + bias + ReLU
        let projected = matvec(&self.w_o, &head_outputs);
        let mut out: Vec<f64> = projected
            .iter()
            .zip(self.b_o.iter())
            .map(|(p, b)| p + b)
            .collect();
        out = relu_vec(&out);

        // Residual: if self embedding and output have the same dim, add self projection
        // (simplified: when dims match, add h_self padded/truncated)
        if h_self.len() == out.len() {
            for (o, s) in out.iter_mut().zip(h_self.iter()) {
                *o += s;
            }
        }

        out
    }
}

// ─────────────────────────────────────────────────────────────────────────────
// TgatModel
// ─────────────────────────────────────────────────────────────────────────────

/// Full TGAT model: stack of `TgatLayer`s with shared time encoding.
///
/// ## Usage
///
/// ```rust,no_run
/// use scirs2_graph::temporal::tgnn::{TgatModel, TgatConfig, TgnnGraph};
///
/// let config = TgatConfig::default();
/// let model = TgatModel::new(&config, 4).expect("model");
/// let mut graph = TgnnGraph::with_zero_features(5, 4);
/// let embeddings = model.forward(&graph, 10.0).expect("forward");
/// assert_eq!(embeddings.len(), 5);
/// ```
#[derive(Debug, Clone)]
pub struct TgatModel {
    /// Attention layers
    pub layers: Vec<TgatLayer>,
    /// Time encoder shared across layers
    pub time_enc: super::time_encoding::TimeEncode,
    /// Configuration used at construction
    pub config: TgatConfig,
    /// Output embedding dimension
    pub output_dim: usize,
}

impl TgatModel {
    /// Create a new TGAT model.
    ///
    /// `node_feat_dim` is the raw feature dimension; if 0, one-hot style
    /// features of size `config.head_dim` are used.
    pub fn new(config: &TgatConfig, node_feat_dim: usize) -> Result<Self> {
        let eff_feat_dim = if node_feat_dim == 0 {
            config.head_dim
        } else {
            node_feat_dim
        };

        let time_enc = super::time_encoding::TimeEncode::new(config.time_dim)?;

        let mut layers = Vec::with_capacity(config.num_layers);
        let output_dim = config.num_heads * config.head_dim;

        // Layer 0 takes raw node features; subsequent layers take previous output
        let first_layer = TgatLayer::new(
            eff_feat_dim,
            config.time_dim,
            config.num_heads,
            config.head_dim,
            12345,
        )?;
        let first_output = first_layer.output_dim;
        layers.push(first_layer);

        for layer_idx in 1..config.num_layers {
            let layer = TgatLayer::new(
                first_output, // subsequent layers consume previous layer's output
                config.time_dim,
                config.num_heads,
                config.head_dim,
                12345 + layer_idx as u64 * 999,
            )?;
            layers.push(layer);
        }

        Ok(TgatModel {
            layers,
            time_enc,
            config: config.clone(),
            output_dim,
        })
    }

    /// Compute embeddings for all nodes at query time `t`.
    ///
    /// Returns `Vec<Vec<f64>>` of length `n_nodes`, each of length `output_dim`.
    ///
    /// Causal masking: only edges with `timestamp < query_time` are used.
    pub fn forward(&self, graph: &TgnnGraph, query_time: f64) -> Result<Vec<Vec<f64>>> {
        let n = graph.n_nodes;
        if n == 0 {
            return Ok(Vec::new());
        }

        // Initialise with node features, padding/truncating to eff_feat_dim
        let eff_feat_dim = if graph.node_feat_dim == 0 {
            self.config.head_dim
        } else {
            graph.node_feat_dim
        };

        let mut current_embeddings: Vec<Vec<f64>> = (0..n)
            .map(|i| {
                let feat = graph.node_feat(i);
                if feat.is_empty() {
                    vec![0.0f64; eff_feat_dim]
                } else if feat.len() == eff_feat_dim {
                    feat.to_vec()
                } else {
                    // Pad or truncate
                    let mut v = vec![0.0f64; eff_feat_dim];
                    let copy_len = feat.len().min(eff_feat_dim);
                    v[..copy_len].copy_from_slice(&feat[..copy_len]);
                    v
                }
            })
            .collect();

        // Apply each layer
        for layer in &self.layers {
            let prev_embeddings = current_embeddings.clone();
            let mut next_embeddings = Vec::with_capacity(n);

            for i in 0..n {
                // Gather temporal neighbors before query_time
                let nbr_tuples = graph.neighbors_before(i, query_time);

                // Build (h_neighbor, t_edge) pairs using previous layer embeddings
                let neighbors: Vec<(Vec<f64>, f64)> = nbr_tuples
                    .iter()
                    .map(|(j, t_edge, _edge_feat)| {
                        let h_nbr = prev_embeddings
                            .get(*j)
                            .cloned()
                            .unwrap_or_else(|| vec![0.0f64; prev_embeddings[0].len()]);
                        (h_nbr, *t_edge)
                    })
                    .collect();

                let h_self = &prev_embeddings[i];
                let new_h = layer.forward_node(h_self, &neighbors, query_time, &self.time_enc);
                next_embeddings.push(new_h);
            }
            current_embeddings = next_embeddings;
        }

        Ok(current_embeddings)
    }

    /// Compute `TemporalPrediction` records for all nodes at time `t`.
    pub fn predict(&self, graph: &TgnnGraph, query_time: f64) -> Result<Vec<TemporalPrediction>> {
        let embeddings = self.forward(graph, query_time)?;
        Ok(embeddings
            .into_iter()
            .enumerate()
            .map(|(i, emb)| TemporalPrediction::new(i, emb, query_time))
            .collect())
    }
}

// ─────────────────────────────────────────────────────────────────────────────
// Tests
// ─────────────────────────────────────────────────────────────────────────────

#[cfg(test)]
mod tests {
    use super::*;
    use super::super::types::{TgatConfig, TgnnEdge, TgnnGraph};
    use super::super::time_encoding::TimeEncode;

    fn simple_graph() -> TgnnGraph {
        let mut g = TgnnGraph::with_zero_features(5, 4);
        // Past edges (t < 10.0)
        g.add_edge(TgnnEdge::no_feat(0, 1, 1.0));
        g.add_edge(TgnnEdge::no_feat(1, 2, 2.0));
        g.add_edge(TgnnEdge::no_feat(2, 3, 3.0));
        g.add_edge(TgnnEdge::no_feat(3, 4, 4.0));
        // Future edge (t > 10.0) — must not be attended to
        g.add_edge(TgnnEdge::no_feat(0, 4, 15.0));
        g
    }

    #[test]
    fn test_tgat_output_shape() {
        let config = TgatConfig {
            num_heads: 2,
            time_dim: 8,
            head_dim: 8,
            num_layers: 1,
            dropout: 0.0,
        };
        let model = TgatModel::new(&config, 4).expect("model creation");
        let graph = simple_graph();
        let embeddings = model.forward(&graph, 10.0).expect("forward pass");

        assert_eq!(embeddings.len(), 5, "must produce one embedding per node");
        let expected_dim = config.num_heads * config.head_dim;
        for emb in &embeddings {
            assert_eq!(emb.len(), expected_dim, "each embedding has wrong dim");
        }
    }

    #[test]
    fn test_tgat_causal_masking() {
        // The future edge (0→4, t=15) must not influence embeddings at t=10
        let config = TgatConfig {
            num_heads: 1,
            time_dim: 8,
            head_dim: 8,
            num_layers: 1,
            dropout: 0.0,
        };
        let model = TgatModel::new(&config, 4).expect("model");

        let mut g_with_future = TgnnGraph::with_zero_features(5, 4);
        g_with_future.add_edge(TgnnEdge::no_feat(0, 1, 1.0));
        g_with_future.add_edge(TgnnEdge::no_feat(0, 4, 15.0)); // future

        let mut g_no_future = TgnnGraph::with_zero_features(5, 4);
        g_no_future.add_edge(TgnnEdge::no_feat(0, 1, 1.0));

        let emb_future = model.forward(&g_with_future, 10.0).expect("forward");
        let emb_no_future = model.forward(&g_no_future, 10.0).expect("forward");

        // Embeddings must be identical since future edge is masked
        for (ef, en) in emb_future.iter().zip(emb_no_future.iter()) {
            for (a, b) in ef.iter().zip(en.iter()) {
                assert!(
                    (a - b).abs() < 1e-10,
                    "future edge must not influence embeddings"
                );
            }
        }
    }

    #[test]
    fn test_tgat_attention_softmax_sums_one() {
        // Verify the attention weight computation via a unit test on the layer
        let layer = TgatLayer::new(4, 8, 1, 8, 42).expect("layer");
        let time_enc = TimeEncode::new(8).expect("enc");

        let h_self = vec![1.0, 0.0, 0.0, 0.0];
        let neighbors = vec![
            (vec![0.0, 1.0, 0.0, 0.0], 1.0_f64),
            (vec![0.0, 0.0, 1.0, 0.0], 2.0_f64),
            (vec![0.0, 0.0, 0.0, 1.0], 3.0_f64),
        ];

        // Manually compute attention weights to verify softmax property
        let phi_self = time_enc.encode(0.0);
        let q_input = concat(&h_self, &phi_self);
        let q = matvec(&layer.w_q[0], &q_input);

        let keys: Vec<Vec<f64>> = neighbors
            .iter()
            .map(|(h_nbr, t_nbr)| {
                let phi = time_enc.encode_delta(10.0, *t_nbr);
                let kv = concat(h_nbr, &phi);
                matvec(&layer.w_k[0], &kv)
            })
            .collect();

        let logits = scaled_dot_product(&q, &keys);
        let alphas = softmax(&logits);
        let sum: f64 = alphas.iter().sum();
        assert!((sum - 1.0).abs() < 1e-10, "attention weights must sum to 1, got {}", sum);
        for &a in &alphas {
            assert!(a >= 0.0, "attention weight must be non-negative");
        }
    }

    #[test]
    fn test_tgat_with_no_neighbors() {
        // Node with no past neighbors must produce a zero embedding
        let config = TgatConfig {
            num_heads: 2,
            time_dim: 8,
            head_dim: 8,
            num_layers: 1,
            dropout: 0.0,
        };
        let model = TgatModel::new(&config, 4).expect("model");

        // Graph with only a future edge (so all nodes have no past neighbors at t=0.5)
        let mut g = TgnnGraph::with_zero_features(3, 4);
        g.add_edge(TgnnEdge::no_feat(0, 1, 5.0)); // future relative to t=0.5

        let embeddings = model.forward(&g, 0.5).expect("forward");
        // All nodes have zero features and no neighbors → embeddings should be zero
        for emb in &embeddings {
            let norm: f64 = emb.iter().map(|x| x * x).sum::<f64>().sqrt();
            // Without self-loops or non-zero features, the output from attention
            // (no neighbors → zero attended output) + residual (h_self all zeros)
            // should produce zero or near-zero
            assert!(
                norm < 1e-10,
                "node with no neighbors and zero features should produce ~zero embedding, got norm={}",
                norm
            );
        }
    }

    #[test]
    fn test_tgat_multi_head_concat() {
        // Verify that multi-head output has dim = num_heads * head_dim
        let config = TgatConfig {
            num_heads: 4,
            time_dim: 8,
            head_dim: 6,
            num_layers: 1,
            dropout: 0.0,
        };
        let model = TgatModel::new(&config, 4).expect("model");
        let graph = simple_graph();
        let embeddings = model.forward(&graph, 5.0).expect("forward");
        let expected_dim = 4 * 6; // num_heads * head_dim
        for emb in &embeddings {
            assert_eq!(emb.len(), expected_dim, "multi-head concat size wrong");
        }
    }

    #[test]
    fn test_tgat_two_layers() {
        let config = TgatConfig {
            num_heads: 2,
            time_dim: 8,
            head_dim: 8,
            num_layers: 2,
            dropout: 0.0,
        };
        let model = TgatModel::new(&config, 4).expect("model");
        assert_eq!(model.layers.len(), 2);
        let graph = simple_graph();
        let embeddings = model.forward(&graph, 10.0).expect("2-layer forward");
        assert_eq!(embeddings.len(), 5);
    }
}