[[bin]]
name = "scattr"
path = "src/main.rs"
[dependencies.aho-corasick]
version = "1.1.2"
[dependencies.anyhow]
version = "1.0.80"
[dependencies.argmin]
features = ["serde1", "rayon"]
version = "0.10.0"
[dependencies.argmin-checkpointing-file]
version = "0.1.0"
[dependencies.argmin-math]
version = "0.4.0"
[dependencies.argmin-observer-paramwriter]
version = "0.1.0"
[dependencies.argmin-observer-slog]
version = "0.1.0"
[dependencies.bio]
version = "1.5.0"
[dependencies.cached]
version = "0.51.3"
[dependencies.chrono]
version = "0.4.38"
[dependencies.clap]
features = ["derive"]
version = "4.5.1"
[dependencies.csv]
version = "1.3.0"
[dependencies.exitcode]
version = "1.1.2"
[dependencies.indexmap]
version = "2.2.3"
[dependencies.indicatif]
version = "0.17.8"
[dependencies.log]
version = "0.4.20"
[dependencies.ndarray]
version = "0.15.6"
[dependencies.ndarray-ndimage]
version = "0.4.0"
[dependencies.num]
version = "0.4.3"
[dependencies.plotters]
version = "0.3.6"
[dependencies.rand]
features = ["small_rng"]
version = "0.8.5"
[dependencies.rand_xoshiro]
version = "0.6.0"
[dependencies.rayon]
version = "1.8.1"
[dependencies.rust-htslib]
version = "0.46.0"
[dependencies.serde]
version = "1.0.197"
[dependencies.serde_json]
version = "1.0.114"
[dependencies.slog]
version = "2.7.0"
[dependencies.slog-async]
version = "2.8.0"
[dependencies.slog-scope]
version = "4.4.0"
[dependencies.slog-stdlog]
version = "4.1.1"
[dependencies.slog-term]
version = "2.9.1"
[dependencies.statrs]
version = "0.17.1"
[lib]
name = "scattr"
path = "src/lib.rs"
[package]
autobenches = false
autobins = false
autoexamples = false
autotests = false
build = false
categories = ["command-line-utilities", "science"]
description = "A tool for estimating the copy number of large tandem repeats"
edition = "2021"
keywords = ["genomics", "genotyping", "bioinformatics", "biology"]
license = "MIT OR Apache-2.0"
name = "scattr"
readme = "README.md"
repository = "https://github.com/rashidalabri/scattr"
version = "0.2.0"