sam-formatter 1.2.0

Convert SAM/BAM alignments into uniform tabular output (CSV, TSV, PSV, Parquet, custom), with optional tag columns and random downsampling.
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27

name: ci

on:
  push:
    branches: [main]
  pull_request:

permissions:
  contents: read

jobs:
  ci:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v7
      - name: Install Rust (stable, with fmt + clippy)
        uses: dtolnay/rust-toolchain@stable
        with:
          components: rustfmt, clippy
      - name: Cache cargo registry and target
        uses: Swatinem/rust-cache@v2
      - name: rustfmt
        run: cargo fmt --all --check
      - name: clippy
        run: cargo clippy --all-targets -- -D warnings
      - name: test
        run: cargo test --all