sam-formatter 1.2.0

Convert SAM/BAM alignments into uniform tabular output (CSV, TSV, PSV, Parquet, custom), with optional tag columns and random downsampling.
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "sam-formatter"
version = "1.2.0"
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Convert SAM/BAM alignments into uniform tabular output (CSV, TSV, PSV, Parquet, custom), with optional tag columns and random downsampling."
homepage = "https://github.com/jiangyun-fun/sam-formatter"
documentation = "https://docs.rs/sam-formatter"
readme = "README.md"
keywords = [
    "sam",
    "bam",
    "bioinformatics",
    "sequencing",
    "parquet",
]
categories = [
    "science::bioinformatics",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/jiangyun-fun/sam-formatter"

[[bin]]
name = "sam-formatter"
path = "src/main.rs"

[[test]]
name = "e2e"
path = "tests/e2e.rs"

[dependencies.arrow]
version = "59.0.0"

[dependencies.clap]
version = "4.6.1"
features = ["derive"]

[dependencies.csv]
version = "1.4.0"

[dependencies.noodles-bam]
version = "0.90"

[dependencies.noodles-sam]
version = "0.85"

[dependencies.parquet]
version = "59.0.0"
features = ["arrow"]

[dependencies.rand]
version = "0.10"