salmon-core 2.0.0

Shared core types for the Rust port of salmon (transcripts, library formats, log-space math).
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//! Shared live-progress counters for the quantification drivers.

use std::sync::atomic::AtomicU64;

/// Lock-free counters a quant driver updates as it runs, so a UI (e.g. a CLI
/// progress bar) can poll mapping progress while quantification is in flight.
/// Shared by both the reads-mode (`salmon-quant`) and alignment-mode
/// (`salmon-align`) drivers.
#[derive(Debug, Default)]
pub struct ProgressCounters {
    /// fragments observed so far
    pub processed: AtomicU64,
    /// fragments mapped so far
    pub mapped: AtomicU64,
}