salmon-align 2.0.1

Alignment-based (BAM) quantification for the salmon Rust port.
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.91"
name = "salmon-align"
version = "2.0.1"
authors = ["Rob Patro and the COMBINE-lab"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Alignment-based (BAM) quantification for the salmon Rust port."
readme = false
license = "BSD-3-Clause"
repository = "https://github.com/COMBINE-lab/salmon"

[lib]
name = "salmon_align"
path = "src/lib.rs"

[[example]]
name = "replicate_bam"
path = "examples/replicate_bam.rs"

[dependencies.anyhow]
version = "1"

[dependencies.crossbeam-channel]
version = "0.5"

[dependencies.flate2]
version = "1"

[dependencies.jiff]
version = "0.2"

[dependencies.noodles-bam]
version = "0.90"

[dependencies.noodles-bgzf]
version = "0.47"

[dependencies.noodles-sam]
version = "0.85"

[dependencies.rayon]
version = "1"

[dependencies.salmon-core]
version = "2.0.1"

[dependencies.salmon-eqclass]
version = "2.0.1"

[dependencies.salmon-infer]
version = "2.0.1"

[dependencies.salmon-model]
version = "2.0.1"

[dependencies.serde]
version = "1"
features = ["derive"]

[dependencies.serde_json]
version = "1"

[dependencies.tracing]
version = "0.1"

[dev-dependencies.tempfile]
version = "3"

[lints.clippy]
needless_range_loop = "allow"
too_many_arguments = "allow"
type_complexity = "allow"

[lints.rust]
unsafe_code = "warn"