rype 1.0.0-rc.1

High-performance genomic sequence classification using minimizer-based k-mer sketching in RY space
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.70"
name = "rype"
version = "1.0.0-rc.1"
authors = ["The RYpe Development Team <damcdonald@ucsd.edu>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "High-performance genomic sequence classification using minimizer-based k-mer sketching in RY space"
homepage = "https://github.com/the-miint/rype"
documentation = "https://docs.rs/rype"
readme = "README.md"
keywords = [
    "bioinformatics",
    "microbiome",
    "genomics",
    "minimizer",
    "classification",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "BSD-3-Clause"
repository = "https://github.com/the-miint/rype"

[features]
arrow-ffi = ["arrow/ffi"]
default = []

[lib]
name = "rype"
crate-type = [
    "cdylib",
    "rlib",
]
path = "src/lib.rs"

[[bin]]
name = "debug_inverted"
path = "src/bin/debug_inverted.rs"

[[bin]]
name = "rype"
path = "src/main.rs"

[[test]]
name = "arrow_integration_tests"
path = "tests/arrow_integration_tests.rs"

[[test]]
name = "cli_integration_tests"
path = "tests/cli_integration_tests.rs"

[[test]]
name = "config_integration_test"
path = "tests/config_integration_test.rs"

[[test]]
name = "orient_integration_tests"
path = "tests/orient_integration_tests.rs"

[[test]]
name = "parquet_structure_tests"
path = "tests/parquet_structure_tests.rs"

[[test]]
name = "readme_example_test"
path = "tests/readme_example_test.rs"

[[test]]
name = "shard_integration_tests"
path = "tests/shard_integration_tests.rs"

[[test]]
name = "unified_c_api_tests"
path = "tests/unified_c_api_tests.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.arrow]
version = "57"
default-features = false

[dependencies.bytes]
version = "1.5"

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.env_logger]
version = "0.11"

[dependencies.flate2]
version = "1.1.8"

[dependencies.libc]
version = "0.2"

[dependencies.log]
version = "0.4"

[dependencies.needletail]
version = "0.6"

[dependencies.parquet]
version = "57"
features = [
    "zstd",
    "snap",
    "arrow",
]
default-features = false

[dependencies.rayon]
version = "1.8"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.toml]
version = "1.0"

[dependencies.zstd]
version = "0.13"

[dev-dependencies.tempfile]
version = "3.24.0"