rvdna 0.3.0

rvDNA — AI-native genomic analysis. 20-SNP biomarker risk scoring, streaming anomaly detection, 64-dim profile vectors, 23andMe genotyping, CYP2D6/CYP2C19 pharmacogenomics, variant calling, protein prediction, and HNSW vector search in pure Rust.
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "rvdna"
version = "0.3.0"
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "rvDNA — AI-native genomic analysis. 20-SNP biomarker risk scoring, streaming anomaly detection, 64-dim profile vectors, 23andMe genotyping, CYP2D6/CYP2C19 pharmacogenomics, variant calling, protein prediction, and HNSW vector search in pure Rust."
homepage = "https://github.com/ruvnet/ruvector/tree/main/examples/dna"
documentation = "https://docs.rs/rvdna"
readme = "README.md"
keywords = [
    "genomics",
    "bioinformatics",
    "dna",
    "pharmacogenomics",
    "23andme",
]
categories = [
    "science",
    "algorithms",
    "wasm",
]
license = "MIT"
repository = "https://github.com/ruvnet/ruvector"

[lib]
name = "rvdna"
path = "src/lib.rs"

[[bin]]
name = "rvdna-cli"
path = "src/main.rs"

[[test]]
name = "biomarker_tests"
path = "tests/biomarker_tests.rs"

[[test]]
name = "kmer_tests"
path = "tests/kmer_tests.rs"

[[test]]
name = "pipeline_tests"
path = "tests/pipeline_tests.rs"

[[test]]
name = "security_tests"
path = "tests/security_tests.rs"

[[bench]]
name = "biomarker_bench"
path = "benches/biomarker_bench.rs"
harness = false

[[bench]]
name = "dna_bench"
path = "benches/dna_bench.rs"
harness = false

[[bench]]
name = "solver_bench"
path = "benches/solver_bench.rs"
harness = false

[dependencies.anyhow]
version = "1.0"

[dependencies.bincode]
version = "2.0.0-rc.3"
features = ["serde"]

[dependencies.chrono]
version = "0.4"

[dependencies.ndarray]
version = "0.16"
features = ["serde"]

[dependencies.rand]
version = "0.8"

[dependencies.rand_distr]
version = "0.4"

[dependencies.ruvector-attention]
version = "0.1.31"

[dependencies.ruvector-collections]
version = "2.0.2"

[dependencies.ruvector-core]
version = "2.0.2"

[dependencies.ruvector-dag]
version = "0.1.0"

[dependencies.ruvector-filter]
version = "2.0.2"

[dependencies.ruvector-gnn]
version = "2.0.2"

[dependencies.ruvector-graph]
version = "2.0.2"

[dependencies.ruvector-math]
version = "2.0.2"

[dependencies.ruvector-solver]
version = "2.0.3"
features = [
    "forward-push",
    "neumann",
    "cg",
]
default-features = false

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.thiserror]
version = "2.0"

[dependencies.tokio]
version = "1.41"
features = [
    "rt-multi-thread",
    "macros",
    "time",
]

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]

[dependencies.uuid]
version = "1.11"
features = ["v4"]

[dev-dependencies.criterion]
version = "0.5"
features = ["html_reports"]

[dev-dependencies.tempfile]
version = "3.8"