rustynetics 0.1.4

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[package]
edition = "2021"
name = "rustynetics"
version = "0.1.4"
authors = ["Philipp Benner"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A high-performance genomics libary specialized in handling BAM and BigWig files"
documentation = "https://docs.rs/rustynetics"
readme = "README.md"
keywords = [
    "rust",
    "genomics",
    "bioinformatics",
]
categories = [
    "command-line-utilities",
    "science",
    "data-structures",
]
license = "MIT"
repository = "https://github.com/pbenner/rustynetics"

[lib]
name = "rustynetics"
path = "src/lib.rs"

[[bin]]
name = "bam-check-bin"
path = "src/bin/bam-check-bin.rs"

[[bin]]
name = "bam-check-fastq"
path = "src/bin/bam-check-fastq.rs"

[[bin]]
name = "bam-genome"
path = "src/bin/bam-genome.rs"

[[bin]]
name = "bam-to-bigwig"
path = "src/bin/bam-to-bigwig.rs"

[[bin]]
name = "bam-to-fastq"
path = "src/bin/bam-to-fastq.rs"

[[bin]]
name = "bam-view"
path = "src/bin/bam-view.rs"

[[bin]]
name = "bed-remove-overlaps"
path = "src/bin/bed-remove-overlaps.rs"

[[bin]]
name = "bigwig-counts-to-quantiles"
path = "src/bin/bigwig-counts-to-quantiles.rs"

[[bin]]
name = "bigwig-edit-chrom-names"
path = "src/bin/bigwig-edit-chrom-names.rs"

[[bin]]
name = "bigwig-extract"
path = "src/bin/bigwig-extract.rs"

[[bin]]
name = "bigwig-extract-chroms"
path = "src/bin/bigwig-extract-chroms.rs"

[[bin]]
name = "bigwig-genome"
path = "src/bin/bigwig-genome.rs"

[[bin]]
name = "bigwig-histogram"
path = "src/bin/bigwig-histogram.rs"

[[bin]]
name = "bigwig-info"
path = "src/bin/bigwig-info.rs"

[[bin]]
name = "bigwig-map"
path = "src/bin/bigwig-map.rs"

[[bin]]
name = "bigwig-nil"
path = "src/bin/bigwig-nil.rs"

[[bin]]
name = "bigwig-positive"
path = "src/bin/bigwig-positive.rs"

[[bin]]
name = "bigwig-quantile-normalize"
path = "src/bin/bigwig-quantile-normalize.rs"

[[bin]]
name = "bigwig-query"
path = "src/bin/bigwig-query.rs"

[[bin]]
name = "bigwig-query-sequence"
path = "src/bin/bigwig-query-sequence.rs"

[[bin]]
name = "bigwig-statistics"
path = "src/bin/bigwig-statistics.rs"

[[bin]]
name = "chromhmm-tables-to-bigwig"
path = "src/bin/chromhmm-tables-to-bigwig.rs"

[[bin]]
name = "count-kmers"
path = "src/bin/count-kmers.rs"

[[bin]]
name = "draw-genomic-regions"
path = "src/bin/draw-genomic-regions.rs"

[[bin]]
name = "fasta-extract"
path = "src/bin/fasta-extract.rs"

[[bin]]
name = "fasta-unresolved-regions"
path = "src/bin/fasta-unresolved-regions.rs"

[[bin]]
name = "gtf-to-bed"
path = "src/bin/gtf-to-bed.rs"

[[bin]]
name = "meme-extract"
path = "src/bin/meme-extract.rs"

[[bin]]
name = "observed-over-expected-cpg"
path = "src/bin/observed-over-expected-cpg.rs"

[[bin]]
name = "pwm-scan-regions"
path = "src/bin/pwm-scan-regions.rs"

[[bin]]
name = "pwm-scan-sequences"
path = "src/bin/pwm-scan-sequences.rs"

[[bin]]
name = "segmentation-differential"
path = "src/bin/segmentation-differential.rs"

[[bin]]
name = "sequence-similarity"
path = "src/bin/sequence-similarity.rs"

[[test]]
name = "test_bam_fastq"
path = "tests/test_bam_fastq.rs"

[[test]]
name = "test_bam_to_fastq"
path = "tests/test_bam_to_fastq.rs"

[[test]]
name = "test_bigwig"
path = "tests/test_bigwig.rs"

[[test]]
name = "test_genome"
path = "tests/test_genome.rs"

[[test]]
name = "test_granges"
path = "tests/test_granges.rs"

[[test]]
name = "test_meta"
path = "tests/test_meta.rs"

[dependencies.approx]
version = "0.5.1"

[dependencies.async-stream]
version = "0.3.5"

[dependencies.byteorder]
version = "1.5.0"

[dependencies.clap]
version = "4.3"
features = ["derive"]

[dependencies.flate2]
version = "1.0"

[dependencies.futures]
version = "0.3.31"

[dependencies.futures-core]
version = "0.3.30"

[dependencies.futures-util]
version = "0.3.30"

[dependencies.libloading]
version = "0.8.9"

[dependencies.list_comprehension_macro]
version = "0.1"

[dependencies.mysql]
version = "25.0.1"

[dependencies.num]
version = "0.4"

[dependencies.plotters]
version = "0.3.7"

[dependencies.quick-xml]
version = "0.38"
features = ["serialize"]

[dependencies.rand]
version = "0.8.5"

[dependencies.regex]
version = "1.10"

[dependencies.reqwest]
version = "0.12.8"
features = ["blocking"]

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"