Enum rustyms::modification::Modification

pub enum Modification {
    Mass(Mass),
    Formula(MolecularFormula),
    Glycan(Vec<(MonoSaccharide, isize)>),
    GlycanStructure(GlycanStructure),
    Predefined(MolecularFormula, Vec<PlacementRule>, Ontology, String, usize),
    Gno(GnoComposition, String),
}

A modification on an amino acid

Variants

Mass(Mass)

A modification defined with a monoisotopic mass shift

Formula(MolecularFormula)

A modification defined with a molecular formula

Glycan(Vec<(MonoSaccharide, isize)>)

A glycan without a defined structure

GlycanStructure(GlycanStructure)

A glycan with a defined structure

Predefined(MolecularFormula, Vec<PlacementRule>, Ontology, String, usize)

A modification from one of the modification ontologies

Gno(GnoComposition, String)

A modification from one of the modification ontologies

Implementations

impl Modification

pub fn try_from( line: &str, range: Range<usize>, lookup: &mut Vec<(Option<String>, Option<Self>)> ) -> Result<ReturnModification, CustomError>

Try to parse the modification. Any ambiguous modification will be number according to the lookup (which may be added to if necessary). The result is the modification, with, if applicable, its determined ambiguous group.

Errors

If it is not a valid modification return a CustomError explaining the error.

pub fn sloppy_modification(line: &str, location: Range<usize>) -> Option<Self>

Parse a modification defined by sloppy names

pub fn is_possible( &self, seq: &SequenceElement, index: usize, length: usize ) -> bool

Check to see if this modification can be placed on the specified element

Trait Implementations

impl Chemical for Modification

fn formula(&self) -> MolecularFormula

Get the molecular formula

impl Clone for Modification

fn clone(&self) -> Modification

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Modification

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Modification

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for Modification

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for Modification

fn eq(&self, other: &Modification) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for Modification

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl StructuralPartialEq for Modification