rustqc 0.1.1

Fast RNA-seq QC in a single pass: dupRadar, featureCounts, 8 RSeQC tools, preseq, samtools stats, and Qualimap — reimplemented in Rust
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.87"
name = "rustqc"
version = "0.1.1"
authors = [
    "Phil Ewels <phil.ewels@seqera.io>",
    "Jon Manning <jonathan.manning@seqera.io>",
]
build = "build.rs"
exclude = [
    "benchmark/",
    "docs/",
    "paper/",
    "tests/",
    ".github/",
    "Dockerfile",
    ".dockerignore",
    ".pre-commit-config.yaml",
    "netlify.toml",
    "CONTRIBUTING.md",
    "AGENTS.md",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Fast RNA-seq QC in a single pass: dupRadar, featureCounts, 8 RSeQC tools, preseq, samtools stats, and Qualimap — reimplemented in Rust"
homepage = "https://seqeralabs.github.io/RustQC/"
readme = "README.md"
keywords = [
    "bioinformatics",
    "rna-seq",
    "duplication",
    "qc",
    "rseqc",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "GPL-3.0-or-later"
repository = "https://github.com/seqeralabs/RustQC"

[[bin]]
name = "rustqc"
path = "src/main.rs"

[dependencies.anyhow]
version = "1"

[dependencies.clap]
version = "4"
features = ["derive"]

[dependencies.coitrees]
version = "0.4"

[dependencies.console]
version = "0.15"

[dependencies.crc32fast]
version = "1.5.0"

[dependencies.env_logger]
version = "0.11"

[dependencies.flate2]
version = "1"

[dependencies.indexmap]
version = "2"

[dependencies.indicatif]
version = "0.17"

[dependencies.log]
version = "0.4"

[dependencies.number_prefix]
version = "0.4"

[dependencies.plotters]
version = "0.3"
features = ["fontconfig-dlopen"]

[dependencies.plotters-backend]
version = "0.3"

[dependencies.plotters-svg]
version = "0.3"

[dependencies.rand]
version = "0.10"

[dependencies.rand_chacha]
version = "0.10"

[dependencies.rayon]
version = "1.11"

[dependencies.rust-htslib]
version = "1"
features = ["static"]

[dependencies.serde]
version = "1"
features = ["derive"]

[dependencies.serde_json]
version = "1"

[dependencies.serde_yaml_ng]
version = "0.10"

[build-dependencies.cc]
version = "1"

[profile.release]
opt-level = 3
lto = true
codegen-units = 1
strip = true