rustalign-fmindex 0.2.0

Ultrafast DNA sequence aligner using FM-index and Smith-Waterman

Coverage
100%
45 out of 45 items documented0 out of 7 items with examples
Size
Source code size: 93.15 kB This is the summed size of all the files inside the crates.io package for this release.
Documentation size: 3.92 MB This is the summed size of all files generated by rustdoc for all configured targets
Ø build duration
this release: 20s Average build duration of successful builds.
all releases: 20s Average build duration of successful builds in releases after 2024-10-23.
Links
Repository
crates.io
Dependencies
Versions
- 0.2.0 (2026-02-21)
Owners

RustAlign FM-index Implementation

This crate implements the FM-index (Full-text index in Minute space) based on the Burrows-Wheeler Transform, used for ultrafast sequence alignment in RustAlign.

Key Components

[Ebwt] - Extended Burrows-Wheeler Transform (main FM-index structure)
[SideLocus] - Position within the FM-index (side, byte, bitpair)
[EbwtParams] - Parameters describing the index structure
[Reference] - Reference sequence storage and extraction