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SwAligner

rustalign_aligner

Struct SwAligner 

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pub struct SwAligner { /* private fields */ }
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Smith-Waterman aligner with banded DP

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impl SwAligner

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pub fn new(params: SwParams) -> Self

Create a new Smith-Waterman aligner

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pub fn align(&self, read: &[Nuc], reference: &[Nuc]) -> BwtResult<Alignment>

Align a read to a reference sequence

Uses Smith-Waterman DP with optional banding for optimization. When band_width > 0, only computes cells within band_width/2 of the main diagonal.

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impl Default for SwAligner

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fn default() -> Self

Returns the “default value” for a type. Read more

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

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impl<T, U> TryFrom<U> for T
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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.