rust-igraph 0.7.0

Pure-Rust, high-performance graph & network analysis library — 1297 APIs, zero unsafe, igraph-compatible
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
//! GraphOpt force-directed layout (ALGO-LO-009).
//!
//! Port of the graphopt layout algorithm by Michael Schmuhl.
//! Uses physical analogies: Coulomb repulsion between all vertex pairs
//! and Hooke spring attraction along edges, iterated until equilibrium.
//!
//! Reference: <https://web.archive.org/web/20220611030748/http://www.schmuhl.org/graphopt/>

use crate::core::{Graph, IgraphError, IgraphResult};

/// Parameters for the GraphOpt layout.
#[derive(Debug, Clone)]
pub struct GraphoptParams {
    /// Number of iterations. Default: 500.
    pub niter: u32,
    /// Charge of each vertex (Coulomb repulsion). Default: 0.001.
    pub node_charge: f64,
    /// Mass of each vertex (inertia). Default: 30.0.
    pub node_mass: f64,
    /// Rest length of springs (edges). Default: 0.0.
    pub spring_length: f64,
    /// Spring constant (Hooke's law). Default: 1.0.
    pub spring_constant: f64,
    /// Maximum displacement per axis per iteration. Default: 5.0.
    pub max_sa_movement: f64,
}

impl Default for GraphoptParams {
    fn default() -> Self {
        Self {
            niter: 500,
            node_charge: 0.001,
            node_mass: 30.0,
            spring_length: 0.0,
            spring_constant: 1.0,
            max_sa_movement: 5.0,
        }
    }
}

/// Compute the GraphOpt force-directed layout.
///
/// Vertices repel each other via Coulomb force and are attracted along
/// edges via Hooke spring force. The system is iterated for `niter`
/// steps; each step accumulates forces, divides by mass, clamps
/// displacement, and moves vertices.
///
/// Edge directions are ignored (treated as undirected).
///
/// # Arguments
///
/// * `graph` — input graph.
/// * `seed` — optional initial positions. If `None`, random positions
///   are generated.
/// * `params` — algorithm parameters.
///
/// Returns `[x, y]` positions for each vertex.
///
/// # Errors
///
/// Returns `InvalidArgument` if `node_mass` is zero (division by zero)
/// or if `seed` length doesn't match vertex count.
///
/// # Examples
///
/// ```
/// use rust_igraph::{Graph, layout_graphopt, GraphoptParams};
///
/// let mut g = Graph::with_vertices(5);
/// g.add_edge(0, 1).unwrap();
/// g.add_edge(1, 2).unwrap();
/// g.add_edge(2, 3).unwrap();
/// g.add_edge(3, 4).unwrap();
/// g.add_edge(4, 0).unwrap();
///
/// let params = GraphoptParams::default();
/// let pos = layout_graphopt(&g, None, &params).unwrap();
/// assert_eq!(pos.len(), 5);
/// assert!(pos.iter().all(|p| p[0].is_finite() && p[1].is_finite()));
/// ```
pub fn layout_graphopt(
    graph: &Graph,
    seed: Option<&[[f64; 2]]>,
    params: &GraphoptParams,
) -> IgraphResult<Vec<[f64; 2]>> {
    let n = graph.vcount() as usize;
    if n == 0 {
        return Ok(Vec::new());
    }

    if params.node_mass == 0.0 {
        return Err(IgraphError::InvalidArgument(
            "node_mass must be non-zero".into(),
        ));
    }
    if let Some(s) = seed {
        if s.len() != n {
            return Err(IgraphError::InvalidArgument(format!(
                "seed length ({}) must equal vertex count ({})",
                s.len(),
                n
            )));
        }
    }

    let no_edges = graph.ecount();
    let apply_electric = params.node_charge != 0.0;

    // Coulomb's constant
    const COULOMBS_CONSTANT: f64 = 8_987_500_000.0;

    // Build edge list
    let mut edges: Vec<(usize, usize)> = Vec::with_capacity(no_edges);
    for eid in 0..no_edges as u32 {
        if let Ok((src, tgt)) = graph.edge(eid) {
            edges.push((src as usize, tgt as usize));
        }
    }

    // Initialize positions
    let mut pos = if let Some(s) = seed {
        s.to_vec()
    } else {
        let mut rng = SplitMix64::new(42);
        (0..n)
            .map(|_| [rng.next_uniform() - 0.5, rng.next_uniform() - 0.5])
            .collect()
    };

    let mut forces_x = vec![0.0_f64; n];
    let mut forces_y = vec![0.0_f64; n];

    for _iter in 0..params.niter {
        // Clear forces
        for fx in forces_x.iter_mut() {
            *fx = 0.0;
        }
        for fy in forces_y.iter_mut() {
            *fy = 0.0;
        }

        // Electrical repulsion (all pairs)
        if apply_electric {
            for this in 0..n {
                for other in (this + 1)..n {
                    let dx = pos[this][0] - pos[other][0];
                    let dy = pos[this][1] - pos[other][1];
                    let distance = (dx * dx + dy * dy).sqrt();

                    if distance == 0.0 || distance >= 500.0 {
                        continue;
                    }

                    let directed_force = COULOMBS_CONSTANT
                        * (params.node_charge * params.node_charge)
                        / (distance * distance);

                    let fx = directed_force * dx.abs() / distance;
                    let fy = directed_force * dy.abs() / distance;

                    // Force on this_node away from other_node
                    let sign_x = if pos[other][0] < pos[this][0] {
                        1.0
                    } else {
                        -1.0
                    };
                    let sign_y = if pos[other][1] < pos[this][1] {
                        1.0
                    } else {
                        -1.0
                    };

                    forces_x[this] -= sign_x * fx;
                    forces_y[this] -= sign_y * fy;
                    forces_x[other] += sign_x * fx;
                    forces_y[other] += sign_y * fy;
                }
            }
        }

        // Spring forces along edges
        for &(src, tgt) in &edges {
            let dx = pos[src][0] - pos[tgt][0];
            let dy = pos[src][1] - pos[tgt][1];
            let distance = (dx * dx + dy * dy).sqrt();

            if distance == 0.0 {
                continue;
            }

            let displacement = (distance - params.spring_length).abs();
            let directed_force = -params.spring_constant * displacement;

            // Determine spring axial forces
            if distance == params.spring_length {
                continue;
            }

            let fx_abs = directed_force.abs() * dx.abs() / distance;
            let fy_abs = directed_force.abs() * dy.abs() / distance;

            // Base direction: force on src away from tgt (like electric)
            let sign_x = if pos[tgt][0] < pos[src][0] { 1.0 } else { -1.0 };
            let sign_y = if pos[tgt][1] < pos[src][1] { 1.0 } else { -1.0 };

            // If spring is too long, pull toward; if too short, push away
            let spring_sign = if distance > params.spring_length {
                1.0
            } else {
                -1.0
            };

            // Half force to each node (spring is shared)
            let hfx = 0.5 * spring_sign * sign_x * fx_abs;
            let hfy = 0.5 * spring_sign * sign_y * fy_abs;

            // src is pulled toward tgt (negative of repulsion direction)
            forces_x[src] += hfx;
            forces_y[src] += hfy;
            forces_x[tgt] -= hfx;
            forces_y[tgt] -= hfy;
        }

        // Move nodes
        for v in 0..n {
            let mut x_move = forces_x[v] / params.node_mass;
            let mut y_move = forces_y[v] / params.node_mass;

            x_move = x_move.clamp(-params.max_sa_movement, params.max_sa_movement);
            y_move = y_move.clamp(-params.max_sa_movement, params.max_sa_movement);

            pos[v][0] += x_move;
            pos[v][1] += y_move;
        }
    }

    Ok(pos)
}

// ═══════════════════════════════════════════════════════════════════
// Internal RNG
// ═══════════════════════════════════════════════════════════════════

struct SplitMix64 {
    state: u64,
}

impl SplitMix64 {
    fn new(seed: u64) -> Self {
        Self { state: seed }
    }

    fn next_u64(&mut self) -> u64 {
        self.state = self.state.wrapping_add(0x9E37_79B9_7F4A_7C15);
        let mut z = self.state;
        z = (z ^ (z >> 30)).wrapping_mul(0xBF58_476D_1CE4_E5B9);
        z = (z ^ (z >> 27)).wrapping_mul(0x94D0_49BB_1331_11EB);
        z ^ (z >> 31)
    }

    fn next_uniform(&mut self) -> f64 {
        (self.next_u64() >> 11) as f64 / ((1u64 << 53) as f64)
    }
}

// ═══════════════════════════════════════════════════════════════════
// Tests
// ═══════════════════════════════════════════════════════════════════

#[cfg(test)]
mod tests {
    use super::*;

    #[test]
    fn test_graphopt_empty() {
        let g = Graph::with_vertices(0);
        let params = GraphoptParams::default();
        let pos = layout_graphopt(&g, None, &params).unwrap();
        assert!(pos.is_empty());
    }

    #[test]
    fn test_graphopt_single() {
        let g = Graph::with_vertices(1);
        let params = GraphoptParams::default();
        let pos = layout_graphopt(&g, None, &params).unwrap();
        assert_eq!(pos.len(), 1);
        assert!(pos[0][0].is_finite());
    }

    #[test]
    fn test_graphopt_triangle() {
        let mut g = Graph::with_vertices(3);
        g.add_edge(0, 1).unwrap();
        g.add_edge(1, 2).unwrap();
        g.add_edge(2, 0).unwrap();
        let params = GraphoptParams {
            niter: 100,
            ..GraphoptParams::default()
        };
        let pos = layout_graphopt(&g, None, &params).unwrap();
        assert_eq!(pos.len(), 3);
        for p in &pos {
            assert!(p[0].is_finite() && p[1].is_finite());
        }
    }

    #[test]
    fn test_graphopt_path() {
        let mut g = Graph::with_vertices(5);
        for i in 0..4 {
            g.add_edge(i, i + 1).unwrap();
        }
        let params = GraphoptParams {
            niter: 50,
            ..GraphoptParams::default()
        };
        let pos = layout_graphopt(&g, None, &params).unwrap();
        assert_eq!(pos.len(), 5);
        for p in &pos {
            assert!(p[0].is_finite() && p[1].is_finite());
        }
    }

    #[test]
    fn test_graphopt_with_seed() {
        let mut g = Graph::with_vertices(3);
        g.add_edge(0, 1).unwrap();
        g.add_edge(1, 2).unwrap();
        let seed = vec![[0.0, 0.0], [1.0, 0.0], [0.5, 0.866]];
        let params = GraphoptParams {
            niter: 50,
            ..GraphoptParams::default()
        };
        let pos = layout_graphopt(&g, Some(&seed), &params).unwrap();
        assert_eq!(pos.len(), 3);
    }

    #[test]
    fn test_graphopt_seed_wrong_length() {
        let g = Graph::with_vertices(3);
        let seed = vec![[0.0, 0.0]];
        let params = GraphoptParams::default();
        assert!(layout_graphopt(&g, Some(&seed), &params).is_err());
    }

    #[test]
    fn test_graphopt_zero_mass() {
        let g = Graph::with_vertices(3);
        let params = GraphoptParams {
            node_mass: 0.0,
            ..GraphoptParams::default()
        };
        assert!(layout_graphopt(&g, None, &params).is_err());
    }

    #[test]
    fn test_graphopt_no_charge() {
        let mut g = Graph::with_vertices(4);
        g.add_edge(0, 1).unwrap();
        g.add_edge(1, 2).unwrap();
        g.add_edge(2, 3).unwrap();
        g.add_edge(3, 0).unwrap();
        let params = GraphoptParams {
            niter: 50,
            node_charge: 0.0,
            ..GraphoptParams::default()
        };
        let pos = layout_graphopt(&g, None, &params).unwrap();
        assert_eq!(pos.len(), 4);
        for p in &pos {
            assert!(p[0].is_finite() && p[1].is_finite());
        }
    }

    #[test]
    fn test_graphopt_deterministic() {
        let mut g = Graph::with_vertices(4);
        g.add_edge(0, 1).unwrap();
        g.add_edge(1, 2).unwrap();
        g.add_edge(2, 3).unwrap();
        g.add_edge(3, 0).unwrap();
        let params = GraphoptParams {
            niter: 50,
            ..GraphoptParams::default()
        };
        let pos1 = layout_graphopt(&g, None, &params).unwrap();
        let pos2 = layout_graphopt(&g, None, &params).unwrap();
        for i in 0..4 {
            assert!((pos1[i][0] - pos2[i][0]).abs() < 1e-10);
            assert!((pos1[i][1] - pos2[i][1]).abs() < 1e-10);
        }
    }

    #[test]
    fn test_graphopt_no_edges() {
        let g = Graph::with_vertices(4);
        let params = GraphoptParams {
            niter: 50,
            ..GraphoptParams::default()
        };
        let pos = layout_graphopt(&g, None, &params).unwrap();
        assert_eq!(pos.len(), 4);
        for p in &pos {
            assert!(p[0].is_finite() && p[1].is_finite());
        }
    }

    #[test]
    fn test_graphopt_vertices_spread() {
        let mut g = Graph::with_vertices(4);
        g.add_edge(0, 1).unwrap();
        g.add_edge(2, 3).unwrap();
        let params = GraphoptParams {
            niter: 100,
            ..GraphoptParams::default()
        };
        let pos = layout_graphopt(&g, None, &params).unwrap();
        // Vertices shouldn't all collapse to the same point
        let mut all_same = true;
        for i in 1..4 {
            if (pos[i][0] - pos[0][0]).abs() > 1e-6 || (pos[i][1] - pos[0][1]).abs() > 1e-6 {
                all_same = false;
                break;
            }
        }
        assert!(!all_same, "all vertices collapsed to the same point");
    }
}