rust-htslib 0.32.0

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Documentation 
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name: CI

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

jobs:
  Formatting:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout repository
        uses: actions/checkout@v2

      - name: Install stable toolchain
        uses: actions-rs/toolchain@v1
        with:
          toolchain: stable
          override: true
          components: rustfmt
      
      - name: Check format
        run: cargo fmt -- --check
     
  Linting:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout repository
        uses: actions/checkout@v2

      - name: Checkout submodules
        uses: textbook/git-checkout-submodule-action@2.0.0

      - name: Install stable toolchain
        uses: actions-rs/toolchain@v1
        with:
          toolchain: stable
          override: true
          components: clippy

      - name: Lint with clippy
        uses: actions-rs/clippy-check@v1
        with:
          token: ${{ secrets.GITHUB_TOKEN }}


  Testing:
    needs: Formatting
    runs-on: ubuntu-latest
    steps:
      - name: Checkout repository
        uses: actions/checkout@v2

      - name: Checkout submodules
        uses: textbook/git-checkout-submodule-action@2.0.0

      - name: Install stable toolchain
        uses: actions-rs/toolchain@v1
        with:
          toolchain: stable
          override: true

      - name: Install system dependencies
        run: |
            sudo apt-get install --yes zlib1g-dev libbz2-dev musl musl-dev musl-tools clang libc6-dev

      - name: Run cargo-tarpaulin
        uses: actions-rs/tarpaulin@v0.1
        with:
          args: '--out Lcov --exclude-files hts-sys/*_prebuilt_bindings.rs -- --test-threads 1'

      - name: Upload coverage
        uses: coverallsapp/github-action@master
        with:
          github-token: ${{ secrets.GITHUB_TOKEN }}
          path-to-lcov: ./lcov.info

      - name: Test standard build without default features
        uses: actions-rs/cargo@v1
        with:
          command: test
          args: --no-default-features

      - name: Test standard build with all features
        uses: actions-rs/cargo@v1
        with:
          command: test
          args: --all-features

      - name: Test musl build without default features
        env:
           CFLAGS: -I/usr/local/musl/include
        uses: actions-rs/cargo@v1
        with:
          use-cross: true
          command: build
          args: --target x86_64-unknown-linux-musl --no-default-features

      - name: Test musl build with all features
        env:
           CFLAGS: -I/usr/local/musl/include
        uses: actions-rs/cargo@v1
        with:
          use-cross: true  
          command: build
          args: --target x86_64-unknown-linux-musl --all-features