rosella 0.5.7

Metagenome assembled genome recovery from metagenomes using UMAP and HDBSCAN
Documentation 
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name: Build manual pages and deploy documentation

on:
  push:
    branches:
      - main
    paths:
      - 'docs/**'
      - 'src/cli.rs'
      - 'doctave.yaml'
      - '.github/workflows/deploy-docs.yaml'
      - 'build_manuals.sh'
      - 'roff_to_md.sh'
      - 'prelude'

jobs:
  build:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - name: 'Checkout cargo and install doctave'
        uses: actions-rs/toolchain@v1
        with:
          toolchain: stable
      - run: cargo install --git https://github.com/Doctave/doctave --tag 0.4.2
      - name: 'Build manual pages'
        run: bash build_manuals.sh
      - name: 'Convert to markdown: recover'
        uses: docker://pandoc/core:2.9
        with:
          args: -t markdown -f man --output=docs/usage/rosella-recover.wd.md docs/usage/rosella-recover.wd.roff
      - name: 'Convert to markdown: refine'
        uses: docker://pandoc/core:2.9
        with:
          args: -t markdown -f man --output=docs/usage/rosella-refine.wd.md docs/usage/rosella-refine.wd.roff
      - name: 'Cleanup markdown'
        run: bash roff_to_md.sh
      - name: 'Build doctave site'
        run: doctave build --release --allow-failed-checks
      - name: 'GitHub Pages'
        if: github.ref == 'refs/heads/main'
        uses: crazy-max/ghaction-github-pages@v3.0.0
        with:
          build_dir: site/
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}