rosella 0.5.7

Metagenome assembled genome recovery from metagenomes using UMAP and HDBSCAN
Documentation 
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[[bin]]
name = "rosella"
path = "src/bin/rosella.rs"

[dependencies.annembed]
features = ["intel-mkl-static"]
optional = true
version = "^0.0.11"

[dependencies.anyhow]
version = "^1.0"

[dependencies.bird_tool_utils]
version = "^0.4"

[dependencies.bird_tool_utils-man]
version = "^0.4"

[dependencies.clap]
features = ["cargo"]
version = "^4"

[dependencies.clap_complete]
version = "^4"

[dependencies.csv]
version = "1"

[dependencies.env_logger]
version = "0.6"

[dependencies.finch]
optional = true
version = "^0.6"

[dependencies.hnsw_rs]
optional = true
version = "^0.1"

[dependencies.indicatif]
version = "^0.18"

[dependencies.itertools]
version = "0.8"

[dependencies.lazy_static]
version = "1.3.0"

[dependencies.linfa]
optional = true
version = "^0.6"

[dependencies.linfa-nn]
optional = true
version = "^0.6"

[dependencies.linfa-preprocessing]
optional = true
version = "^0.6"

[dependencies.log]
version = "0.4"

[dependencies.ndarray]
features = ["rayon"]
version = "^0.15"

[dependencies.ndarray-npy]
version = "^0.8"

[dependencies.needletail]
version = "^0.5"

[dependencies.num-traits]
optional = true
version = "0.2.15"

[dependencies.petal-clustering]
optional = true
version = "^0.5"

[dependencies.petgraph]
optional = true
version = "0.6.3"

[dependencies.rand]
version = "0.6"

[dependencies.rayon]
version = "^1.5.1"

[dependencies.roff]
version = "^0.2"

[dependencies.serde]
version = "1"

[dependencies.serde_derive]
version = "1"

[dependencies.serde_json]
version = "1"

[dependencies.serde_yaml]
version = "0.8"

[dependencies.statrs]
version = "^0.16"

[dependencies.tempfile]
version = "3.0"

[dev-dependencies.assert_cli]
version = "0.6.*"

[features]
deafult = []
no_flight = ["dep:linfa", "dep:linfa-nn", "dep:linfa-preprocessing", "dep:petal-clustering", "dep:finch", "dep:hnsw_rs", "dep:petgraph", "dep:annembed"]

[lib]
bench = false
name = "rosella"
path = "src/lib.rs"

[package]
authors = ["Rhys Newell <rhys.newell94@gmail.com"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
default-run = "rosella"
description = "Metagenome assembled genome recovery from metagenomes using UMAP and HDBSCAN"
documentation = "https://github.com/rhysnewell/rosella"
edition = "2021"
exclude = ["tests/*"]
homepage = "https://rhysnewell.github.io/rosella/"
license = "GPL-3.0"
name = "rosella"
readme = "README.md"
repository = "https://github.com/rhysnewell/rosella"
version = "0.5.7"

[profile.bench]
codegen-units = 16
debug = 0
debug-assertions = false
incremental = false
lto = true
opt-level = 3
overflow-checks = false
panic = "unwind"
rpath = false

[profile.dev]
codegen-units = 16
debug = 2
debug-assertions = true
incremental = true
lto = true
opt-level = 0
overflow-checks = true
panic = "unwind"
rpath = false

[profile.release]
codegen-units = 16
debug = 0
debug-assertions = false
incremental = false
lto = true
opt-level = 3
overflow-checks = false
panic = "unwind"
rpath = false
strip = true

[profile.test]
codegen-units = 16
debug = 2
debug-assertions = true
incremental = true
lto = true
opt-level = 3
overflow-checks = true
panic = "unwind"
rpath = false